View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_22 (Length: 341)
Name: NF10559_low_22
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 50556188 - 50555889
Alignment:
| Q |
14 |
agagtggtcgggaggtaagtaaaatatgatcgataattattttagttaagaatcaaattaagcacccgattgatttgatcttatgaa-cttgttaatcac |
112 |
Q |
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| T |
50556188 |
agagtggtcgggaggtaagtaaaatatgatcgataattattttagttaagaatcaaattgagcacccgatcgatttgatcttatgaaacttgttaatcac |
50556089 |
T |
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| Q |
113 |
ttaagttcaatcatttaatttgtgtcaggcatgatttctagcttctatgattcacacattcatttagttctgttttaatatataacacataccataattg |
212 |
Q |
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| T |
50556088 |
ttaagttcaatcatttaatttttgtcaggcatgatttctaccttctatgattcacacattcatttagttctgttttaatatataacacataccataattg |
50555989 |
T |
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| Q |
213 |
agttttctggttataaatgtgcagtaacatatgaacatttattcattgacctggaagcttaaatgtgcataaaatttaagcatgttgtctgtaagattat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50555988 |
agttttctggttataaatgtgcagtaacatatgaacatttattcattgacctggaagcttaaatgtgcataaaatttaagcatgttgtctgtaagattat |
50555889 |
T |
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