View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_23 (Length: 341)
Name: NF10559_low_23
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 41331198 - 41331517
Alignment:
| Q |
18 |
gtttagatgcttacaaatattcacgggagaagagcaaatagtattttagtaggtcaca--------tatacatgttcaaacaaaattccgtgaccaatgt |
109 |
Q |
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| T |
41331198 |
gtttagatgcttacaaatattcacgggagaagagcaaatagtattttagtaggtcacaatgtcacatatacatgttgaaacaaaattccgtgaccaatgt |
41331297 |
T |
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| Q |
110 |
ggacccatccaaagagtgctattggccactcaatacccataatcaatcagatacgagaaactactaaacattatgcaatcatagcacatgaaaaactcat |
209 |
Q |
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| T |
41331298 |
ggacccatccaaagagtgctcttggcca-----tacccataatcaatcagatacgagaaactactaaaaattatgcaatcatagcacatgaaaaactcat |
41331392 |
T |
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| Q |
210 |
tagtgaacatctttgtgctcattttactttaattcaattcaatattaaggaattaaggataactaactatgctaatgaactaatggtggatggtttcgca |
309 |
Q |
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| T |
41331393 |
tagtgaaaatctttgtgctcattttactttaattcaattcaatattaaggaattaaggataactaactatgctaatgaactaatggtggatggttttgca |
41331492 |
T |
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| Q |
310 |
tgtaatggatatagattctctgctt |
334 |
Q |
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| T |
41331493 |
tgtaatggatatagattatctgctt |
41331517 |
T |
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