View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_25 (Length: 340)
Name: NF10559_low_25
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 10456267 - 10456137
Alignment:
| Q |
1 |
tgaagccatacaatctctgcttcaccggttggattccaaaagggcacttccatctgtgcaagaatcagcagccaaaggtgttctcaaaagacttcttccg |
100 |
Q |
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| T |
10456267 |
tgaagccatacaatctctgcttcaccggttggattccaaaagggcacttccatctgtgcaagaatcagcagccaaaggtgttctcaaaagacttcttccg |
10456168 |
T |
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| Q |
101 |
acccatttctccagctttgagtttatcatag |
131 |
Q |
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| T |
10456167 |
acccatttctccagctttgagtttatcatag |
10456137 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 10456026 - 10455940
Alignment:
| Q |
242 |
gtgctctaatacaaagtaagaagggaaaaacaannnnnnnnnnnnctgttacttttgaattagttgttgacttgaccaaagttgttca |
329 |
Q |
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| T |
10456026 |
gtgctctaatacaaagtaagaagggaaaaacaattttttttttt-ctgttacttttgaattagttgttgacttgaccaaagttgttca |
10455940 |
T |
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