View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_26 (Length: 326)
Name: NF10559_low_26
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 36001431 - 36001732
Alignment:
| Q |
18 |
gaacagatccagtgtccaggtaaatgcagttagcagcactcaagtttcgcaaggataccggaagctttggtatgaatttgagtttccggcattcatccaa |
117 |
Q |
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| T |
36001431 |
gaacagatccagtgtccacgtaaatgcagttagcagcactcaagtttcgcaaggatacaggaagctttggtatgaatttgagtttccggcattcatctaa |
36001530 |
T |
|
| Q |
118 |
acaaagccattccaacattgaaatgttttggatgttgtcagggagactttctaagttgcagcagtttaccatccttaggtgttttacagatcgtatggaa |
217 |
Q |
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| T |
36001531 |
acaaagccattccaacattgaaatgttttggatgttgtcagggagactttctaagttgcagcagtttaccatccttaggtgttttacagatcgtatgaaa |
36001630 |
T |
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| Q |
218 |
tgaaatatgaaccacagattccatgtgttgatttgagtgcatcctgacaggtcacaaaatataagagactccaatcctggatcgtttggtaaattcttct |
317 |
Q |
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| T |
36001631 |
tgaaatatgaaccacagattccatgtgttgatttgagtgcatcctgacaggtcacaaaatataagagactccaatcctggatcgtttggtaaattcttct |
36001730 |
T |
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| Q |
318 |
ca |
319 |
Q |
| |
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|| |
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| T |
36001731 |
ca |
36001732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 23471448 - 23471504
Alignment:
| Q |
121 |
aagccattccaacattgaaatgttttggatgttgtcagggagactttctaagttgca |
177 |
Q |
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| T |
23471448 |
aagccattctagcattgaatggttttggatattctctgggagactttctaagttgca |
23471504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 316
Target Start/End: Complemental strand, 12898044 - 12897784
Alignment:
| Q |
56 |
ctcaagtttcgcaaggataccggaagctttggtatgaatttgagtttccggcattcatccaaacaaagccattccaacattgaaatgttttggatgttgt |
155 |
Q |
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| T |
12898044 |
ctcaaattttgcaaagatgcaggaagcttaggtagggacttgagtttcctgcattcatctaaattaagcctttgcaacattgaattgctttggatgttgt |
12897945 |
T |
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| Q |
156 |
cagggagactttctaagttgcagcagtttaccatccttaggtgttttacagatcgtatggaatgaaatatgaaccacagattccatgtgttgatttgagt |
255 |
Q |
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| T |
12897944 |
tggggagagtttctaagttgcagcattttctcaaatttaatcgttttaaagattgtatgccgtcaaggatgaaccacaggttcgatgtattgatttgtgt |
12897845 |
T |
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| Q |
256 |
gcatcctgacaggtcacaaaatataagagactccaatcctggatcgtttggtaaattcttc |
316 |
Q |
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|||||| || ||||| ||| | |||| ||||||||||||||||| |||| ||| |||||| |
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| T |
12897844 |
gcatcccgaaaggtccaaaactgtaagtgactccaatcctggatcatttgttaacttcttc |
12897784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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