View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_28 (Length: 326)
Name: NF10559_low_28
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 26474659 - 26474340
Alignment:
| Q |
1 |
tgtatgttaggagtttagactcgttttttgtattgagtttttgtcatttgattaaatctttacataaatttgttcaaatttccatagtcctctcataatt |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26474659 |
tgtatgttaggagtttagactagttttttgtattgagtttttgtcatttgattaaatctttacataaatttgttcaaatttccatagtcctttcataatt |
26474560 |
T |
|
| Q |
101 |
actatgcatgtctattttgtgtaaaaaattgattttagaaactaattatctcacaagttgagtagaatcacaagaaatgtcaaaacatttccacagtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26474559 |
actatgcatgtctattttgtgtaaaaaattgattttagaaactaattatctcacaagttgagtagaatcacaagaaatgtcaaaacatttccacagtttt |
26474460 |
T |
|
| Q |
201 |
aactttgcactctcaattttggattcaactcaatatatcccttctatcaaaacattaacatacagattcccttagacatttcatttcataataactggta |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
26474459 |
aactttgcactctcaattttggattcaactcaatatatcccttctatcaaaacattaacatacagattcccatagacatttcatttcataataactagta |
26474360 |
T |
|
| Q |
301 |
agtatgcagaatagtaattc |
320 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
26474359 |
agtatgcagaatagtaattc |
26474340 |
T |
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