View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10559_low_29 (Length: 324)

Name: NF10559_low_29
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10559_low_29
NF10559_low_29
[»] chr4 (43 HSPs)
chr4 (1-176)||(42333791-42333966)
chr4 (1-173)||(43143599-43143771)
chr4 (4-170)||(30216760-30216926)
chr4 (4-175)||(50205095-50205266)
chr4 (4-170)||(3292914-3293080)
chr4 (4-170)||(6690253-6690419)
chr4 (4-170)||(10352902-10353068)
chr4 (4-174)||(20129289-20129459)
chr4 (4-173)||(29319723-29319892)
chr4 (4-174)||(25930687-25930857)
chr4 (4-170)||(28877268-28877434)
chr4 (4-170)||(29996001-29996167)
chr4 (4-170)||(48989311-48989477)
chr4 (11-174)||(26439304-26439467)
chr4 (11-173)||(34407309-34407471)
chr4 (4-134)||(44156670-44156800)
chr4 (4-170)||(26448036-26448201)
chr4 (4-173)||(13012168-13012337)
chr4 (4-173)||(47500753-47500922)
chr4 (11-173)||(43355884-43356046)
chr4 (4-129)||(35545977-35546102)
chr4 (4-153)||(36382364-36382512)
chr4 (4-140)||(40529028-40529164)
chr4 (5-143)||(17511252-17511391)
chr4 (4-170)||(30077649-30077814)
chr4 (58-141)||(48129978-48130061)
chr4 (58-164)||(30109945-30110051)
chr4 (4-118)||(1817752-1817866)
chr4 (4-75)||(13392899-13392970)
chr4 (4-75)||(13396038-13396109)
chr4 (63-170)||(45194159-45194266)
chr4 (4-98)||(6235575-6235669)
chr4 (68-170)||(27363344-27363446)
chr4 (112-173)||(7769308-7769369)
chr4 (60-128)||(6254569-6254637)
chr4 (116-170)||(49908782-49908836)
chr4 (116-170)||(5517494-5517548)
chr4 (117-170)||(6212029-6212082)
chr4 (117-170)||(17554979-17555032)
chr4 (105-170)||(13392989-13393054)
chr4 (105-170)||(13396128-13396193)
chr4 (68-125)||(20113819-20113876)
chr4 (116-169)||(50720476-50720529)
[»] chr3 (19 HSPs)
chr3 (1-173)||(11018227-11018399)
chr3 (1-173)||(6503584-6503756)
chr3 (4-170)||(45182964-45183130)
chr3 (4-170)||(6930912-6931078)
chr3 (4-174)||(6269444-6269614)
chr3 (4-170)||(33040936-33041102)
chr3 (4-173)||(22968462-22968631)
chr3 (4-170)||(19565519-19565685)
chr3 (4-176)||(19390123-19390295)
chr3 (7-173)||(27935158-27935324)
chr3 (11-174)||(39771769-39771932)
chr3 (4-170)||(45335858-45336023)
chr3 (4-153)||(34084140-34084289)
chr3 (4-170)||(35514249-35514411)
chr3 (28-140)||(40081782-40081893)
chr3 (58-137)||(5135285-5135364)
chr3 (96-169)||(22922141-22922214)
chr3 (116-170)||(6890981-6891035)
chr3 (104-170)||(5354692-5354758)
[»] chr8 (15 HSPs)
chr8 (1-174)||(4403987-4404160)
chr8 (1-173)||(34136840-34137012)
chr8 (4-170)||(23402091-23402257)
chr8 (4-147)||(16788043-16788186)
chr8 (4-131)||(9877242-9877369)
chr8 (4-170)||(3648812-3648978)
chr8 (4-170)||(29728404-29728570)
chr8 (4-166)||(36408538-36408700)
chr8 (4-153)||(15838286-15838434)
chr8 (4-174)||(39914494-39914663)
chr8 (4-170)||(2729214-2729380)
chr8 (39-134)||(3435288-3435385)
chr8 (4-121)||(42230971-42231086)
chr8 (60-130)||(40470567-40470637)
chr8 (68-166)||(10397122-10397220)
[»] chr7 (22 HSPs)
chr7 (5-176)||(34389075-34389246)
chr7 (4-170)||(37002162-37002328)
chr7 (4-174)||(5555466-5555636)
chr7 (4-170)||(43184486-43184652)
chr7 (4-144)||(35090177-35090317)
chr7 (4-170)||(8867749-8867915)
chr7 (4-173)||(3114114-3114283)
chr7 (4-173)||(14777125-14777294)
chr7 (4-137)||(40920021-40920154)
chr7 (4-170)||(26624728-26624895)
chr7 (4-170)||(7002708-7002874)
chr7 (4-170)||(7048579-7048745)
chr7 (4-170)||(33685547-33685713)
chr7 (4-137)||(38638254-38638387)
chr7 (4-153)||(8394125-8394274)
chr7 (4-153)||(36630816-36630965)
chr7 (4-134)||(36658200-36658330)
chr7 (117-169)||(37966614-37966666)
chr7 (38-94)||(10868525-10868583)
chr7 (108-155)||(10876829-10876876)
chr7 (63-166)||(26502797-26502899)
chr7 (63-166)||(26589815-26589917)
[»] chr5 (22 HSPs)
chr5 (4-170)||(12278878-12279044)
chr5 (4-170)||(31680350-31680516)
chr5 (4-175)||(17332569-17332740)
chr5 (5-173)||(37254621-37254789)
chr5 (4-170)||(31501734-31501900)
chr5 (4-139)||(33430335-33430470)
chr5 (4-170)||(10033910-10034076)
chr5 (4-170)||(13817960-13818126)
chr5 (4-173)||(36293639-36293808)
chr5 (4-174)||(39434675-39434845)
chr5 (4-141)||(39657524-39657661)
chr5 (4-134)||(16155016-16155146)
chr5 (4-145)||(19985947-19986088)
chr5 (4-173)||(26283336-26283505)
chr5 (4-136)||(43068894-43069026)
chr5 (4-147)||(1776394-1776537)
chr5 (4-123)||(16333894-16334013)
chr5 (4-173)||(3155649-3155818)
chr5 (4-170)||(36291354-36291520)
chr5 (58-140)||(28801300-28801382)
chr5 (68-170)||(202622-202724)
chr5 (123-170)||(26543902-26543949)
[»] chr6 (14 HSPs)
chr6 (175-303)||(32666342-32666470)
chr6 (4-170)||(28996713-28996879)
chr6 (4-153)||(18339106-18339255)
chr6 (4-170)||(29743266-29743432)
chr6 (4-173)||(34948776-34948945)
chr6 (4-174)||(13837800-13837970)
chr6 (4-173)||(398597-398766)
chr6 (4-134)||(33229354-33229484)
chr6 (68-169)||(24697899-24698000)
chr6 (58-167)||(31028436-31028545)
chr6 (117-170)||(13647000-13647053)
chr6 (68-125)||(24695515-24695572)
chr6 (117-170)||(34385519-34385572)
chr6 (76-125)||(24072576-24072625)
[»] chr2 (23 HSPs)
chr2 (4-170)||(45418566-45418732)
chr2 (4-175)||(8147329-8147501)
chr2 (5-170)||(770977-771147)
chr2 (1-170)||(8059348-8059517)
chr2 (4-173)||(35962695-35962864)
chr2 (4-173)||(42439966-42440135)
chr2 (4-147)||(41251652-41251795)
chr2 (4-134)||(12756855-12756985)
chr2 (4-174)||(18981596-18981765)
chr2 (4-170)||(44084621-44084787)
chr2 (16-173)||(2958131-2958287)
chr2 (4-173)||(17445059-17445226)
chr2 (4-173)||(6403822-6403991)
chr2 (4-145)||(31581640-31581781)
chr2 (4-173)||(32127159-32127328)
chr2 (4-144)||(16405609-16405749)
chr2 (20-134)||(26162733-26162847)
chr2 (4-153)||(2285862-2286011)
chr2 (53-155)||(26237955-26238056)
chr2 (37-166)||(4555260-4555390)
chr2 (63-144)||(7072627-7072710)
chr2 (74-133)||(34905969-34906028)
chr2 (123-170)||(34523223-34523270)
[»] chr1 (15 HSPs)
chr1 (5-173)||(35907532-35907700)
chr1 (5-170)||(321396-321561)
chr1 (4-173)||(7433425-7433594)
chr1 (5-170)||(17445296-17445461)
chr1 (4-173)||(26144235-26144404)
chr1 (6-153)||(32982076-32982223)
chr1 (9-134)||(42310964-42311089)
chr1 (4-170)||(3828967-3829132)
chr1 (27-170)||(41972314-41972458)
chr1 (27-170)||(33489670-33489815)
chr1 (50-173)||(23313218-23313342)
chr1 (68-138)||(35951427-35951497)
chr1 (117-170)||(44352614-44352667)
chr1 (116-170)||(31866960-31867014)
chr1 (88-170)||(48901207-48901288)
[»] scaffold0502 (1 HSPs)
scaffold0502 (4-153)||(5230-5379)
[»] scaffold0069 (1 HSPs)
scaffold0069 (4-173)||(17822-17991)
[»] scaffold0041 (1 HSPs)
scaffold0041 (4-137)||(52941-53074)
[»] scaffold0154 (1 HSPs)
scaffold0154 (4-170)||(31463-31629)
[»] scaffold2142 (1 HSPs)
scaffold2142 (4-173)||(502-671)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-173)||(480475-480644)
[»] scaffold0769 (1 HSPs)
scaffold0769 (123-170)||(1260-1307)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 42333791 - 42333966
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttg 100  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42333791 attgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 42333890  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatgact 176  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  42333891 agtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgctggacggtgaaaccgtccatgact 42333966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 43143599 - 43143771
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttg 100  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43143599 attgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 43143698  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  43143699 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccatg 43143771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 30216760 - 30216926
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||    
T  30216760 gtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggt 30216859  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  30216860 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaatccgccc 30216926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 50205095 - 50205266
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  |||||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||  |    
T  50205095 gtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgttaattggcttttgggttggat 50205194  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatgac 175  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  50205195 ctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgcccctgac 50205266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 3292914 - 3293080
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  3292914 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 3293013  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||| |||||||||||||||||||||||| |||||||||||| || | || ||||||||||||||    
T  3293014 ctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgccc 3293080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 6690253 - 6690419
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  6690253 gtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 6690352  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  6690353 ctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 6690419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 10352902 - 10353068
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||| ||||||| |||||||||| |||||||| ||||||||| | ||||| ||||| ||    
T  10352902 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggt 10353001  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||    
T  10353002 ctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgccc 10353068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 20129459 - 20129289
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||  ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  20129459 gtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 20129360  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||   |||||| ||||||||||||    
T  20129359 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatga 20129289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 29319723 - 29319892
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||| ||||||  ||||| |||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  29319723 gtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgttaatgggattttgggttgagt 29319822  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| || ||  |||||  |||||||||||    
T  29319823 ctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatacggtagaaccgcccatg 29319892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 25930857 - 25930687
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| | ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  25930857 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 25930758  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
     ||||||||||||||||| |||||||||||| ||||||||| || |||||  |||||  ||||||||||||    
T  25930757 ttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgcccatga 25930687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 28877268 - 28877434
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||| | ||||||||||||||| |||| ||||||||| |||||| |||||| |    
T  28877268 gtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttctttttataagcgtgttaattagcttttaggttgaat 28877367  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||||||||||||| |||||   ||||||| |||| ||  ||||||||||||||||||    
T  28877368 ctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgccc 28877434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 29996001 - 29996167
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||| ||| ||||||||||| |||||||  ||  |||||||| ||||||| |||||||||||||| |||| ||||||||| | ||||| ||||||||    
T  29996001 gtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgttaatggactttttggttgagt 29996100  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||    
T  29996101 ctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 48989477 - 48989311
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  | |||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| |||| ||    
T  48989477 gtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatggacttttgagttgggt 48989378  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
     |||||||||||||||||||||||| |||||  ||||||||||  ||| ||| ||||||||| ||||    
T  48989377 ttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaactgccc 48989311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 26439304 - 26439467
Alignment:
Q  11 aaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgt 110  Q
    |||| ||||| | ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  26439304 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 26439403  T
Q  111 gcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    |||||||||||||| ||||||||| |||||||||||| ||||   |||||| ||||||||||||    
T  26439404 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatga 26439467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 34407309 - 34407471
Alignment:
Q  11 aaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgt 110  Q
    |||| ||||| | ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  34407309 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 34407408  T
Q  111 gcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||| ||||||||| |||||||||||| ||||   |||||| |||||||||||    
T  34407409 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 34407471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 44156800 - 44156670
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  || ||||||||| ||||||  |||| |||||||||||||||||||||||||||||||||||||| ||    
T  44156800 gtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgttaattggcttttgggttgggt 44156701  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||||||||||||||||| | ||||||||    
T  44156700 ctaatgtgcaaaaattatcggttgagcccgg 44156670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 26448201 - 26448036
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||||| |||||||||  | |||||||||| ||||||| ||||||||| ||||||||||||||||||| | ||||||||||   |    
T  26448201 gtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaatggacttttgggttagat 26448103  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
     ||||||||||||||||||||||||| |||||||| ||| |||  ||||||| ||||||||||||||    
T  26448102 ttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgccc 26448036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 13012337 - 13012168
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| |||||| |    
T  13012337 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgaat 13012238  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||   |||||| |||||||||||    
T  13012237 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 13012168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 47500922 - 47500753
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||  ||| |||||||||  |||||| ||||||||    
T  47500922 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgttaatgagctttttggttgagt 47500823  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||   |||||| |||||||||||    
T  47500822 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 47500753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 43356046 - 43355884
Alignment:
Q  11 aaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgt 110  Q
    |||| ||||| | ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  43356046 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 43355947  T
Q  111 gcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||| ||||||||| |||| ||| ||| ||||   |||||| |||||||||||    
T  43355946 gcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtggaaccgcccatg 43355884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 35546102 - 35545977
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||| |||||| |||||  |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| ||    
T  35546102 gtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttgggttgggt 35546003  T
Q  104 ctaatgtgcaaaaattatcgatcgag 129  Q
    || ||| ||||||||| |||||||||    
T  35546002 ctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 36382364 - 36382512
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||  |||||||||||||| |||| ||||||||| | ||||| ||||||||    
T  36382364 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttctttt-gtaaatgtgttaatggactttttggttgagt 36382462  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgcc 153  Q
     ||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  36382463 ttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 40529164 - 40529028
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||||||||||| |||||| |||||| | ||||  ||||||||||||||||||| |||||||||  | |||| ||||||||    
T  40529164 gtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgttaatgagtttttaggttgagt 40529065  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgacc 140  Q
     ||||||||||||||||||||||||| ||||||||||    
T  40529064 ttaatgtgcaaaaattatcgatcgagtccggacgacc 40529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 17511252 - 17511391
Alignment:
Q  5 tgtgctaaattaaatt-ccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||||||| ||||| || |||||||||||  ||| | |||||| | ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  17511252 tgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 17511351  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcc 143  Q
    |||||||||||||||||||||||||| | || ||||||||    
T  17511352 ctaatgtgcaaaaattatcgatcgagtctgggcgaccgcc 17511391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 30077649 - 30077814
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||| | |||||||||||  ||| | |||||| ||||||  ||||||||||||||||||| |||||||||   ||||| ||||| ||    
T  30077649 gtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaatgaactttttggttgggt 30077748  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||| |||||||| ||||| || |||||||||| | ||| ||| ||||||||||||||    
T  30077749 ctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgccc 30077814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 48130061 - 48129978
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccg 141  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  48130061 caaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgaccg 48129978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 30110051 - 30109945
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggac 157  Q
    ||||||||||||||||||||||||||||| | |||| || ||| |||||||||||||||||||||||||||| |||| |||||| ||||| ||| ||| |    
T  30110051 caaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcgtcgggc 30109952  T
Q  158 ggtgaaa 164  Q
    |||||||    
T  30109951 ggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 1817866 - 1817752
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||| ||||| |||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||| ||| ||| ||||| | ||||||| |||  |    
T  1817866 gtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttctttttataaatgtattaatggacttttggattggat 1817767  T
Q  104 ctaatgtgcaaaaat 118  Q
    |||||||||||||||    
T  1817766 ctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 13392899 - 13392970
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgta 75  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  13392899 gtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13392970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 13396038 - 13396109
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgta 75  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  13396038 gtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13396109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 45194266 - 45194159
Alignment:
Q  63 ttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtga 162  Q
    |||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||||| |||| | | |||| ||| ||| ||| ||||||    
T  45194266 ttttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgtcgggcggtga 45194167  T
Q  163 aaccgccc 170  Q
    ||| ||||    
T  45194166 aactgccc 45194159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 6235669 - 6235575
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggt 98  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| | ||||| ||||||||||||||||||| ||||||||| | |||||||||    
T  6235669 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggacttttgggt 6235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 27363446 - 27363344
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccg 167  Q
    ||||||||||||||||||| ||||||||||||| | ||||| ||||||||   |||||||||||||| |||||||||| | |||||  ||||| ||||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  168 ccc 170  Q
    |||    
T  27363346 ccc 27363344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 7769369 - 7769308
Alignment:
Q  112 caaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatg 7769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  60 aatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcga 128  Q
    ||||||| |||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 49908782 - 49908836
Alignment:
Q  116 aattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 49908836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 5517494 - 5517548
Alignment:
Q  116 aattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgccc 5517548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 6212029 - 6212082
Alignment:
Q  117 attatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||| ||| |||||||||| | ||||||||||||||||||||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgccc 6212082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 17555032 - 17554979
Alignment:
Q  117 attatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgccc 17554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 13392989 - 13393054
Alignment:
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||| ||||||| | |||||| |||||||| |||||| ||||| |||| || ||||||||||||||    
T  13392989 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13393054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 13396128 - 13396193
Alignment:
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||| ||||||| | |||||| |||||||| |||||| ||||| |||| || ||||||||||||||    
T  13396128 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13396193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 20113876 - 20113819
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgat 125  Q
    ||||| ||||||||||||| ||||||||||||||  |||||||  | |||||||||||    
T  20113876 tttttttaagtgtgttaatcggcttttgggttgaacctaatgtaaagaaattatcgat 20113819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 50720476 - 50720529
Alignment:
Q  116 aattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcc 169  Q
    |||||| ||| |||||||| |||||||||| | ||||||| |||||||||||||    
T  50720476 aattattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcc 50720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 11018227 - 11018399
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttg 100  Q
    |||||||||||||| |||||| ||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11018227 attgtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 11018326  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| || |||||||||||  |||||||||||||||||||||||||    
T  11018327 agtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatg 11018399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 6503584 - 6503756
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttg 100  Q
    |||||||||||||| ||| |||||||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  6503584 attgtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgctaattggcttttgggttg 6503683  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  6503684 agtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatg 6503756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 45183130 - 45182964
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  45183130 gtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 45183031  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  45183030 ctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 6930912 - 6931078
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| |||||||  |||||||||||||||||| |||||||||||||||||||||||  |    
T  6930912 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgttaattggcttttgggttggat 6931011  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||| |||||||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||    
T  6931012 ctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 6931078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 6269444 - 6269614
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  6269444 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 6269543  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||   |||||  ||||||||||||    
T  6269544 ctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgctacacggtagaaccgcccatga 6269614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 33041102 - 33040936
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||| ||    
T  33041102 gtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgttaattagcttttgggttgggt 33041003  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||| ||||||||||||| ||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  33041002 ctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgccc 33040936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 22968462 - 22968631
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||| | ||||||||||   ||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| |||    
T  22968462 gtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttaagt 22968561  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||   |||||  |||||||||||    
T  22968562 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgctacacggtagaaccgcccatg 22968631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 19565519 - 19565685
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||| ||||||  ||||||||||||||||||| ||||||||| |  |||| ||||| ||    
T  19565519 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgggt 19565618  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||    
T  19565619 ctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 19565685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 19390295 - 19390123
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| | ||||| ||||||||    
T  19390295 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatagacttttaggttgagt 19390196  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatgact 176  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||  |||||  |||| |||||||||    
T  19390195 ctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgccacacggtagaacctcccatgact 19390123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 27935324 - 27935158
Alignment:
Q  7 tgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtcta 106  Q
    |||||||| ||||||||||||||||||   | |||||||||| ||||||| |||||||||||||||||||||||||||||  |||||||||||| || ||    
T  27935324 tgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggttta 27935225  T
Q  107 atgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||||||||||||| |||| |||| || | ||| | |||||||||| ||||||    
T  27935224 atgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaaccacccatg 27935158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 39771932 - 39771769
Alignment:
Q  11 aaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgt 110  Q
    |||| ||||| | ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  39771932 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 39771833  T
Q  111 gcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    |||||||||||||| ||||||||| |||||||||||| ||||   |||||| ||||||||||||    
T  39771832 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatga 39771769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 45336023 - 45335858
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||| |||||||| ||||||| || |||||||||||||||| |||||||| || ||||| ||||| ||    
T  45336023 gtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgttaa-tgactttttggttgggt 45335925  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||| ||||||||||||| ||| |||| |||||||||| | ||||||| ||||||||||||||    
T  45335924 ctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 45335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 34084140 - 34084289
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| | ||||| ||||||||||||||||||| ||||||||| | ||||| |||||| |    
T  34084140 gtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgaat 34084239  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgcc 153  Q
     ||||||||||||||||||||||||| |||| |||||||||||| |||||    
T  34084240 ttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 35514411 - 35514249
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| |||||||||||   ||||||||||| | ||||  |||||||||||||||||    |||||||| | |||||||||||  |    
T  35514411 gtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttctttttgt----gtgttaatggacttttgggttggat 35514316  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||| | ||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||    
T  35514315 ctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaactgccc 35514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 40081782 - 40081893
Alignment:
Q  28 ctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcg 127  Q
    |||||||  ||||| |||||| | ||||| ||||||||||||||||||| |||||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  40081782 ctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgagcttttgg-ttgagtctaatgttcaaaaattatcgatcg 40081880  T
Q  128 agcccggacgacc 140  Q
    ||||||| |||||    
T  40081881 agcccgggcgacc 40081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 5135364 - 5135285
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacg 137  Q
    |||||||||||||||||||||||||||||  |||||| ||||| ||||||||| ||||||| |||||||||||| |||||    
T  5135364 caaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgagcctggacg 5135285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 22922214 - 22922141
Alignment:
Q  96 ggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcc 169  Q
    |||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||  |||||| |||||||    
T  22922214 ggttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 6891035 - 6890981
Alignment:
Q  116 aattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgccc 6890981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 5354758 - 5354692
Alignment:
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||  |||||||  |||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  5354758 ctaatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgccc 5354692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 4404160 - 4403987
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttg 100  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  4404160 attgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 4404061  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| | ||||||||| ||||||    
T  4404060 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgccggccagtgaaaccgtccatga 4403987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 34136840 - 34137012
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttg 100  Q
    |||||||||||||| ||||| |||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  34136840 attgtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttg 34136939  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||| ||||||    
T  34136940 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccatg 34137012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 23402257 - 23402091
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||| ||||| ||||| |||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  23402257 gtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 23402158  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||| |||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  23402157 ctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 23402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 16788043 - 16788186
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16788043 gtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 16788142  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggg 147  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  16788143 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 16788186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 9877369 - 9877242
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||  ||    
T  9877369 gtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttaggt 9877270  T
Q  104 ctaatgtgcaaaaattatcgatcgagcc 131  Q
    ||||||||||||||||||| ||||||||    
T  9877269 ctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 3648812 - 3648978
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| | ||||| |||  ||||| |||||| ||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||    
T  3648812 gtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagt 3648911  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||| |||||||||||||||||||||| |||| | || ||||||||  |||||  ||||||||    
T  3648912 ctaatgtgaaaaaattatcgatcgagcccgggcgactgtcccggatcgccatacggtagaaccgccc 3648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 29728404 - 29728570
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||  |||||||||||  ||| | |||||| ||||||| ||||||||||||||||||| |||||||||  |||||||||||||||    
T  29728404 gtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagt 29728503  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||||| |||||  |||||  ||||||||    
T  29728504 ctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtagaaccgccc 29728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 36408700 - 36408538
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||| ||||| |||||| |||||||||| |  ||| |||||||| | |||||  ||| |||||||||||||| ||||||||| | |||||||||||  |    
T  36408700 gtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgttaatggacttttgggttggat 36408601  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaacc 166  Q
    ||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||||||    
T  36408600 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaacc 36408538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 15838434 - 15838286
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| |||||||||||||| |||| ||||||||| | ||||| ||||||||    
T  15838434 gtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttt-gtaaatgtgttaatggactttttggttgagt 15838336  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgcc 153  Q
     |||||||||||||||||| |||||||||||  ||||||||||| |||||    
T  15838335 ttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgcc 15838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 39914663 - 39914494
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||| ||||| ||| |||||||||  |||||| ||||||||    
T  39914663 gtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttt-tttttataaatgtgttaatgagctttttggttgagt 39914565  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||   |||||| ||||| ||||||    
T  39914564 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgtccatga 39914494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 2729214 - 2729380
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||  ||||||||||||  | ||||| |||| | |||||  |||  ||||||||| ||||||||||||| ||||||||| |||  |    
T  2729214 gtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttctttttataagtgtgttaatgggcttttggattggat 2729313  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||    
T  2729314 ttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgccc 2729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 3435385 - 3435288
Alignment:
Q  39 tgagaatttttagatt--gctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||||||| |||||  || ||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| |||||||    
T  3435385 tgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgg 3435288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 42231086 - 42230971
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||| |||||||||||| || |||||||||| | ||||| |||||||||||||||||||  |||||||| | |||||| ||||  |    
T  42231086 gtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttctttttgtaa--gtgttaatggacttttgagttggat 42230989  T
Q  104 ctaatgtgcaaaaattat 121  Q
     |||||||||||||||||    
T  42230988 ttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 40470567 - 40470637
Alignment:
Q  60 aatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagc 130  Q
    ||||||| ||||| ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 10397122 - 10397220
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaacc 166  Q
    ||||| ||| ||||||||| ||||||||||||||  |||||||| | ||||||||||| |||||||| |||  ||||||  ||||||| ||||| ||||    
T  10397122 tttttttaactgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcggtgtaacc 10397220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 34389075 - 34389246
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 104  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||    
T  34389075 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggtc 34389174  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatgact 176  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||    
T  34389175 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgcccatgact 34389246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 37002162 - 37002328
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||    
T  37002162 gtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggattgggt 37002261  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||    
T  37002262 ctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgccc 37002328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 5555636 - 5555466
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| || |||||| ||||||||||||||||    
T  5555636 gtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgttaatgggcttttgggttgagt 5555537  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||  |||||  ||||||||||||    
T  5555536 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatga 5555466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 43184486 - 43184652
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||| ||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||    
T  43184486 gtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttaagt 43184585  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    || ||| | |||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||    
T  43184586 ctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgccc 43184652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 35090317 - 35090177
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||    
T  35090317 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 35090218  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgccc 144  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  35090217 ctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 8867749 - 8867915
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  ||||| ||||||  |||||| ||||||||||||||||||| ||| ||||||||||||||| ||| ||    
T  8867749 gtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtattaattggcttttggattgggt 8867848  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  8867849 ctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgccc 8867915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 3114114 - 3114283
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  3114114 gtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 3114213  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| || ||  |||||  |||||||||||    
T  3114214 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtagaaccgcccatg 3114283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 14777125 - 14777294
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| |||||||||  |||||||||||||||    
T  14777125 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagt 14777224  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||   |||||  |||||||||||    
T  14777225 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtagaaccgcccatg 14777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 40920021 - 40920154
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||| | |    
T  40920021 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttgggttaaat 40920120  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacg 137  Q
    ||||||||||||||||||||||||||||||||||    
T  40920121 ctaatgtgcaaaaattatcgatcgagcccggacg 40920154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 26624895 - 26624728
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||  ||||||| ||| ||    
T  26624895 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattaacttttggattgggt 26624796  T
Q  104 ctaatgtgcaaaaattatcg-atcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||| |||||||||||||| ||||||||| | |||||||||||| | ||||| ||||||||||||||    
T  26624795 ctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgccc 26624728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 7002874 - 7002708
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||| ||||||||||  |||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||||||| ||    
T  7002874 gtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttgggttgggt 7002775  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
     ||||||  ||||||  |||||||||||||| ||||||| |||| ||||||| ||||||||||||||    
T  7002774 gtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7002708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 7048745 - 7048579
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||| ||||||||||  |||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||||||| ||    
T  7048745 gtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttgggttgggt 7048646  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
     ||||||  ||||||  |||||||||||||| ||||||| |||| ||||||| ||||||||||||||    
T  7048645 gtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 33685713 - 33685547
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||  ||||| ||||||  | |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||    
T  33685713 gtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggt 33685614  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
     |||||||||||||||||||||||||||||  |||| ||| ||| ||||||| ||||||||||||||    
T  33685613 ttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgccc 33685547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 38638254 - 38638387
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||  |    
T  38638254 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttggat 38638353  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacg 137  Q
    ||||||||||||||||||| ||||||| ||||||    
T  38638354 ctaatgtgcaaaaattatcaatcgagctcggacg 38638387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 8394274 - 8394125
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| |||||||||| |||||||| ||||||||| | ||||| ||||||||    
T  8394274 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgagt 8394175  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgcc 153  Q
     |||||||||||||||||||||||||||||| |||||||||||| |||||    
T  8394174 ttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 36630965 - 36630816
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||| | ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| | ||||| ||||||||    
T  36630965 gtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgagt 36630866  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgcc 153  Q
     |||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  36630865 ttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 36658330 - 36658200
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||| ||||||| ||| ||||||||||||||| ||||| ||    
T  36658330 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagtatgttaattggcttttcggttgggt 36658231  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    | |||||||||||||||||||||||| ||||    
T  36658230 ccaatgtgcaaaaattatcgatcgagtccgg 36658200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 37966614 - 37966666
Alignment:
Q  117 attatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcc 169  Q
    |||||||||||||| |||||||||||| | | ||||||| |||||||||||||    
T  37966614 attatcgatcgagctcggacgaccgcctgaggtcgccgggcggtgaaaccgcc 37966666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 10868525 - 10868583
Alignment:
Q  38 gtgagaatttttagatt--gctcaaatttttctttttgtaagtgtgttaattggctttt 94  Q
    ||||||||||| |||||  || ||||||||||||||||||| ||||||||| |||||||    
T  10868525 gtgagaattttcagattttgcccaaatttttctttttgtaaatgtgttaatgggctttt 10868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 10876829 - 10876876
Alignment:
Q  108 tgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccgg 155  Q
    ||||||||||||||||||||||||||| ||||| | |||| |||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgaccacacgggttcgccgg 10876876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 26502899 - 26502797
Alignment:
Q  63 ttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtga 162  Q
    |||| |||||||| |||||||||| ||||||||||||| |  |||| ||||||||   |||||||||||||| |||| ||| ||| |||||  ||||||     
T  26502899 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtgg 26502801  T
Q  163 aacc 166  Q
    ||||    
T  26502800 aacc 26502797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 26589815 - 26589917
Alignment:
Q  63 ttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtga 162  Q
    |||| |||||||| |||||||||| ||||||||||||| |  |||| ||||||||   |||||||||||||| |||| ||| ||| |||||  ||||||     
T  26589815 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtgg 26589913  T
Q  163 aacc 166  Q
    ||||    
T  26589914 aacc 26589917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 12278878 - 12279044
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||    
T  12278878 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcctttgggttgggt 12278977  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  12278978 ctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 12279044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 31680516 - 31680350
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  31680516 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 31680417  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||| | |||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  31680416 ctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31680350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 17332569 - 17332740
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  17332569 gtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 17332668  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatgac 175  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||| ||||    
T  17332669 ctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgcccctgac 17332740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 37254789 - 37254621
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 104  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||    
T  37254789 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtc 37254690  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||| || |||||||| ||| ||||||  |||||||||||||||||    
T  37254689 taatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgcccatg 37254621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 31501734 - 31501900
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||| |||||||||||||  || ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  31501734 gtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 31501833  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||||||||||||||||||||| | | |||||||| ||||||| ||||||||||||||    
T  31501834 ctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgccc 31501900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 33430470 - 33430335
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  33430470 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 33430371  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgac 139  Q
    |||||| |||||||||||||||||||||||| ||||    
T  33430370 ctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 10034076 - 10033910
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  10034076 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 10033977  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||||||||||||||||||||| ||| || ||||| |||||  |||||  ||||||||    
T  10033976 ctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 13818126 - 13817960
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| || |||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  13818126 gtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 13818027  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||||||||||||||||||||  |||||||||||| |||||  |||||  ||||||||    
T  13818026 ctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 36293639 - 36293808
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  36293639 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 36293738  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||| |||||||||||||||||| |||||||||||| |||| |||||  |||||  |||||||||||    
T  36293739 ctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgcccatg 36293808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 39434845 - 39434675
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||  ||||||||||  |||||| |||||| ||||||| |||||||||| |||||||| ||||||||| ||||||||||||||||    
T  39434845 gtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgttaatgggcttttgggttgagt 39434746  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    |||||||| |||||||||||||||||||||| ||||||||| || |||||  |||||  ||||||||||||    
T  39434745 ctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgcccatga 39434675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 39657524 - 39657661
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| |||||||||  |||||||||||||||    
T  39657524 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagt 39657623  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccg 141  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  39657624 ctaatgtgcaaaaattatcaatcgagcccgaacgaccg 39657661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 16155146 - 16155016
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| |||||||  |||||||||||||| ||| ||||||||| ||||||||||||||||    
T  16155146 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgttaatgggcttttgggttgagt 16155047  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||||||||||||||||||||||||||||    
T  16155046 ctaatgtgcaaaaattatcgatcgagcccgg 16155016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 19986088 - 19985947
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||| ||||| ||||| | |||||||||||  ||||| |||||||||||| | ||||||||||||||||||| |||| |||| | |||||||||||| |    
T  19986088 gtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaatggacttttgggttgaat 19985989  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccg 145  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  19985988 ctaatgtgcaaaaattatcgatcgagctcggacgaccgcccg 19985947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 26283336 - 26283505
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| |||||||||   ||||| ||||||||    
T  26283336 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttggttgagt 26283435  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||| | ||||   |||||| |||||||||||    
T  26283436 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgcccatg 26283505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 43069026 - 43068894
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||| |||||  |||| |||||||| ||||||| ||||||||||||||||||| ||||||||| | ||||||||||| ||    
T  43069026 gtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgttaatggacttttgggttgggt 43068927  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggac 136  Q
    |||||||| ||||||||| ||||||||||||||    
T  43068926 ctaatgtgaaaaaattattgatcgagcccggac 43068894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 1776394 - 1776537
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| | ||||| ||||||||||||||||||| ||||||||| | ||||| |||||| |    
T  1776394 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgact 1776493  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggg 147  Q
     |||||| ||||||||||||||||||||||| ||||||||||||    
T  1776494 ttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggg 1776537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 16333894 - 16334013
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |    
T  16333894 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgaat 16333993  T
Q  104 ctaatgtgcaaaaattatcg 123  Q
    ||||||||||||||||||||    
T  16333994 ctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 3155649 - 3155818
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||| |||||||  ||||| |||||| ||||||  ||||||||||||||| ||| ||||||||| | ||||| ||||||||    
T  3155649 gtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttgagt 3155748  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    | |||||||||||||||| |||||||||||  ||||||||||||||||||  ||| |  |||||||||||    
T  3155749 cgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgccatacgatagaaccgcccatg 3155818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 36291520 - 36291354
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||| ||||| |||||| ||||||||||||  ||| | |||||| ||||||| ||||||||||||||||||| |||||||||   ||||| ||||   |    
T  36291520 gtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgttaatgaacttttaggttagat 36291421  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||||||| |||||| |||||||||||||||||  ||| ||| ||||||||||||||    
T  36291420 ctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgccc 36291354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 28801382 - 28801300
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgacc 140  Q
    ||||||||||||||||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||||||| || |||||    
T  28801382 caaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgagccagggcgacc 28801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 202724 - 202622
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccg 167  Q
    ||||||| ||||| ||||| ||||||||||||    ||||||| || |||||||||||||||||||| ||||| ||  || ||| ||| |||||||||||    
T  202724 tttttgttagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccg 202625  T
Q  168 ccc 170  Q
    |||    
T  202624 ccc 202622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 26543902 - 26543949
Alignment:
Q  123 gatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||| |||||||||||| ||||||| |||| |||||||||    
T  26543902 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 26543949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 32666470 - 32666342
Alignment:
Q  175 ctccatcctaccacttccaacacgatccacattagttggaagtgagggttctctttcaggctgtttagaccatccaaattgattcctctcactggaagta 274  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32666470 ctccatcctaccacttccaacacggtccacattagttggaagtgagggttctctttcaggctgtttagaccatccaaattgattcctctcactggaagca 32666371  T
Q  275 tatgttatttcatcctcaaaggtattatc 303  Q
    |||||||||||||||||||||||||||||    
T  32666370 tatgttatttcatcctcaaaggtattatc 32666342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 28996879 - 28996713
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||    
T  28996879 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttaggttgggt 28996780  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||| |||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||    
T  28996779 ctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgccc 28996713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 18339255 - 18339106
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| | ||| ||    
T  18339255 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttagattgggt 18339156  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgcc 153  Q
    |||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  18339155 ctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 29743432 - 29743266
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||| ||||||| ||||||||||||| ||||| |||||||||   ||||| ||||| ||    
T  29743432 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgttaatgaactttttggttgggt 29743333  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||    
T  29743332 ctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgccc 29743266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 34948776 - 34948945
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||| | ||| |||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  34948776 gtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 34948875  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||||||||||||| || |||||||| ||| |||||  |||||  |||||||||||    
T  34948876 ctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgcccatg 34948945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 13837970 - 13837800
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| |||||| ||  |||||||||||||||    
T  13837970 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttgatgtgcttttgggttgagt 13837871  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    ||||||| ||||||||||||||||| ||||  ||| |||||||| |||||  |||||  ||||||||||||    
T  13837870 ctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtagaaccgcccatga 13837800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 398766 - 398597
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| ||||||||    
T  398766 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagt 398667  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||   |||||| |||||||||||    
T  398666 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 33229354 - 33229484
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||| ||||||| |||||   ||| |||||||| ||||||| |||||||||||||||| || ||||||||| | ||||||||||| ||    
T  33229354 gtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaatggacttttgggttgggt 33229453  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    ||||||| ||||||| |||||||||||||||    
T  33229454 ctaatgtacaaaaatgatcgatcgagcccgg 33229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 24697899 - 24698000
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccg 167  Q
    ||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||| |||||||| |||  | ||||| ||||||| |||||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccg 24697998  T
Q  168 cc 169  Q
    ||    
T  24697999 cc 24698000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 31028436 - 31028545
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggac 157  Q
    |||| ||| |||||||||| |||||||||  |||||| |||||  ||||||||||||||||||||||||||| |||| | ||||| |||| ||||||| |    
T  31028436 caaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccgggc 31028535  T
Q  158 ggtgaaaccg 167  Q
    ||||||||||    
T  31028536 ggtgaaaccg 31028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 13647053 - 13647000
Alignment:
Q  117 attatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||||||| |||||||||||| |||||||  |||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgccc 13647000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 24695572 - 24695515
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgat 125  Q
    ||||||||||||||||||| ||||||||||||||| |||||||  |||||| ||||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcgat 24695515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 34385519 - 34385572
Alignment:
Q  117 attatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||||| || | |||||||||| ||||||| ||||||||||||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgccc 34385572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 24072625 - 24072576
Alignment:
Q  76 agtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgat 125  Q
    ||||||||||| || |||||||||   |||||||||||||||||||||||    
T  24072625 agtgtgttaatgggtttttgggttcgatctaatgtgcaaaaattatcgat 24072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 45418732 - 45418566
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||| ||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||  |    
T  45418732 gtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttggat 45418633  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  45418632 ctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45418566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 8147501 - 8147329
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaattttt-agattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgag 102  Q
    ||||| ||||| ||||||||||| |||||||  ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||| |    
T  8147501 gtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgagttggg 8147402  T
Q  103 tctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatgac 175  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||    
T  8147401 tctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctgac 8147329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 771147 - 770977
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 104  Q
    |||||||||| || ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||    
T  771147 tgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggctttttggttgggtc 771048  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccgcccggga-----tcgccggacggtgaaaccgccc 170  Q
    |||||||||||| ||||||||||||||||| |||||||||||||     ||||||| ||||||||||||||    
T  771047 taatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgccc 770977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 8059348 - 8059517
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttg 100  Q
    |||||||||||||| ||||||||||||| |||||  |||||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||    
T  8059348 attgtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgttaattggcttttgggttg 8059447  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    | ||||||||||||||||||||||| ||||| || ||| || ||||| ||| ||| ||||||||||||||    
T  8059448 actctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgccc 8059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 35962864 - 35962695
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| |||| |||||||||||||| |||||||||  |||||||||||||||    
T  35962864 gtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaataagcttttgggttgagt 35962765  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||  |||||  |||||||||||    
T  35962764 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgcccatg 35962695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 42440135 - 42439966
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||| | |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||| |||    
T  42440135 gtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggtttagt 42440036  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||  |||||  |||||||||||    
T  42440035 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 42439966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 41251652 - 41251795
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  41251652 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 41251751  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggg 147  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  41251752 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 41251795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 12756855 - 12756985
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12756855 gtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 12756954  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||| |||||||||||||||||| |||||    
T  12756955 ctaatgcgcaaaaattatcgatcgaacccgg 12756985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 18981765 - 18981596
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||||| ||||| ||||||||||||||||||| ||| ||||| | ||||||||||||||    
T  18981765 gtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttttaatggacttttgggttgagt 18981666  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatga 174  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||  |||||  ||||||||||||    
T  18981665 ctaatgtgcaaaaattatcaatcgagcccggacgaccgcccggg-tcgccatacggtagaaccgcccatga 18981596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 44084621 - 44084787
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| |||||| ||||||||||||  | |||||||||| ||||||| |||||||||||||||||||||||||||||   ||||||| ||| ||    
T  44084621 gtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttggattgggt 44084720  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
     |||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||    
T  44084721 ttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgccc 44084787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 2958131 - 2958287
Alignment:
Q  16 aaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaa 115  Q
    ||||||| |||||||||||  ||||| |||||| ||||| | ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgc-aa 2958229  T
Q  116 aattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||||||||||||||||| |||||  |||||  |||||||||||    
T  2958230 aattatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgcccatg 2958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 17445059 - 17445226
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  17445059 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 17445158  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||  |||||||||||||||||||||| ||| |||||||||| | |||||  |||||  |||||||||||    
T  17445159 cta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgcccatg 17445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 6403822 - 6403991
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| |||||||||   ||||| ||||||||    
T  6403822 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttggttgagt 6403921  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||   |||||| |||||||||||    
T  6403922 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 6403991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 31581640 - 31581781
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||| |||||    
T  31581640 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggatgagt 31581739  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccg 145  Q
    ||||| |||||||| ||||| ||||||| || ||||||||||    
T  31581740 ctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccg 31581781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 32127159 - 32127328
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| ||| |||||||  ||||| |||||| |||||||  |||||||||||||||||| |||||||||  |||||||||| ||||    
T  32127159 gtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgttaatgagcttttgggtcgagt 32127258  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
     ||||||||||||||||| |||||||||||| |||||||||||| |||||  ||| |  |||||||||||    
T  32127259 ttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacgctagaaccgcccatg 32127328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 16405749 - 16405609
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||| ||||||  ||||| |||||| ||||||  ||||||||||||||| ||| |||||||||  |||||||||||||||    
T  16405749 gtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatgagcttttgggttgagt 16405650  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgccc 144  Q
    |||| ||||||||||||||||| |||||||| |||||||||    
T  16405649 ctaacgtgcaaaaattatcgattgagcccgggcgaccgccc 16405609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 26162733 - 26162847
Alignment:
Q  20 tccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaatt 119  Q
    |||||||||||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| | ||||||| |||||||    
T  26162733 tccgagacctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgaatttaatgtgtaaaaatt 26162832  T
Q  120 atcgatcgagcccgg 134  Q
    |||||  ||||||||    
T  26162833 atcgaaggagcccgg 26162847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 2286011 - 2285862
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| | |||||||||  ||||| |||||| |||||||||||||||||| ||| |||| ||||||||| | ||||| |||||  |    
T  2286011 gtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctttcgtaaatgtgttaatagactttttggttggat 2285912  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgcc 153  Q
     |||||||||||||||||||||||| || | | ||||| ||| |||||||    
T  2285911 ttaatgtgcaaaaattatcgatcgaacctgaatgaccgtccgagatcgcc 2285862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 26238056 - 26237955
Alignment:
Q  53 ttgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgc 152  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| |||  |||||| |||||||| |||||||||||||||| |||||||||||| ||||    
T  26238056 ttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaa-tatcgatcgagcccgggcgaccgcccggggtcgc 26237958  T
Q  153 cgg 155  Q
    |||    
T  26237957 cgg 26237955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 4555260 - 4555390
Alignment:
Q  37 tgtgagaatttttagatt--gctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||||||||| |||||  || |||| |||||||||||||||||||||||   |||||||||||| || | ||||||||||||||||||||||| || |    
T  4555260 tgtgagaattttcagattttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgagtccag 4555359  T
Q  135 acgaccgcccgggatcgccggacggtgaaacc 166  Q
     |||||||||| ||||||||| ||||| ||||    
T  4555360 -cgaccgcccgagatcgccgggcggtggaacc 4555390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 7072627 - 7072710
Alignment:
Q  63 ttttctttttgtaagtgtgt--taattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgccc 144  Q
    |||||||||| |||||||||  |||| |||||||||||||||| ||||||  |||||||||||||||||||||| |||||||||    
T  7072627 ttttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 34906028 - 34905969
Alignment:
Q  74 taagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccg 133  Q
    ||||||||||||| ||||||||||||  |  |||||||||||||||||||||||||||||    
T  34906028 taagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 34523270 - 34523223
Alignment:
Q  123 gatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||| |||||||||||| ||||||| |||| |||||||||    
T  34523270 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 34523223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 35907700 - 35907532
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 104  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||| | |||| ||||||||||||||||||  |||||||||||||||||| |||    
T  35907700 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtactaattggcttttgggttgggtc 35907601  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||||||| ||||||| |||||||||| | ||||||| |||||||||||||||||    
T  35907600 taatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccatg 35907532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 321396 - 321561
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 104  Q
    |||| ||||| ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||| ||||||||| | |||||||||||  ||    
T  321396 tgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgttaatggacttttgggttggatc 321495  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||  ||||||||||||||||||||||||||||||||||  ||||||||  |||||||||||||    
T  321496 taatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgccgggtggtgaaaccgccc 321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 7433594 - 7433425
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||| | |||||||||||  ||||| |||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||    
T  7433594 gtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagt 7433495  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    |||||||||||||||||| |||||||| ||| |||||||||||| | |||  |||||  |||||||||||    
T  7433494 ctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtagaaccgcccatg 7433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 17445461 - 17445296
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 104  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||  ||    
T  17445461 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttggatc 17445362  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||| |||||||||| |||| ||||||| |||||||  ||| ||||||| |  |||||||||||    
T  17445361 taatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgccgggcaatgaaaccgccc 17445296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 26144404 - 26144235
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| ||||||||    
T  26144404 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagt 26144305  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||   |||||| |||||||||||    
T  26144304 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26144235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 32982076 - 32982223
Alignment:
Q  6 gtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtct 105  Q
    ||||||||| ||||||| |||||||||||  ||||| |||||| ||||||  ||||||||||||||||||| | ||||||| ||||||| ||||| ||||    
T  32982076 gtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgttaatgggcttttaggttgggtct 32982175  T
Q  106 aatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgcc 153  Q
    |||||||||||||||||||||| |||||  |||||||||||| |||||    
T  32982176 aatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 42310964 - 42311089
Alignment:
Q  9 ctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaat 108  Q
    |||||| ||||| | |||| ||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  42310964 ctaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaacgggcttttgggttgagtctaat 42311063  T
Q  109 gtgcaaaaattatcgatcgagcccgg 134  Q
    ||||||||||||||||||||||||||    
T  42311064 gtgcaaaaattatcgatcgagcccgg 42311089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 3829132 - 3828967
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||| |||||||||||  | ||| |||||| ||||||| |||||||||||||||||||||||||||||   ||||||||||| ||    
T  3829132 gtgtgctaaataaaattcc-agacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttgggttgggt 3829034  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
     |||||||||||||||||||||||| ||||  |||||| ||||| | |||||  | |||||||||||    
T  3829033 ttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaaccgccc 3828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 41972314 - 41972458
Alignment:
Q  27 cctatttgaatgtgagaatttttagattgct--caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcga 124  Q
    ||||||||  |||||||||||| |||||  |  ||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||||||    
T  41972314 cctatttgcgtgtgagaattttcagattttttccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcga 41972413  T
Q  125 tcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||| || |||||||||||| |||| |||||||| ||||||||    
T  41972414 tcgagccagg-cgaccgcccggggtcgctggacggtggaaccgccc 41972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 33489815 - 33489670
Alignment:
Q  27 cctatttgaatgtgagaatttttagatt--gctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcga 124  Q
    ||||||||  |||||||||||| |||||  ||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||| |||||||||||||    
T  33489815 cctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcga 33489716  T
Q  125 tcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
     | | |||| ||||||| ||||| |||||||  |||||||||||||    
T  33489715 acaatcccgaacgaccgtccggggtcgccgggtggtgaaaccgccc 33489670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 23313342 - 23313218
Alignment:
Q  50 agattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaa-aaattatcgatcgagcccggacgaccgcccggga 148  Q
    ||||||| ||||||||||||||||||| |||||||||   |||||  |||||||||||||||||| |||| ||| ||||||||||| | |||||||| ||    
T  23313342 agattgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccgaga 23313243  T
Q  149 tcgccggacggtgaaaccgcccatg 173  Q
    |||||  |||||  |||||||||||    
T  23313242 tcgccatacggtagaaccgcccatg 23313218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 35951427 - 35951497
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacga 138  Q
    ||||||| ||||||||||| |||| |||||||    ||||||| |||||||||||||||||||||||||||    
T  35951427 tttttgttagtgtgttaatgggctattgggttcgacctaatgtacaaaaattatcgatcgagcccggacga 35951497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 44352614 - 44352667
Alignment:
Q  117 attatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||||||||| ||||| |||||| |||||||| |||||||||||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgccc 44352667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 31867014 - 31866960
Alignment:
Q  116 aattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||| |||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  31867014 aattatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31866960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 48901207 - 48901288
Alignment:
Q  88 ggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||||||||||||| | |||||||||| |||||||||||||| ||||| | |||||||||  | ||||| ||||| ||||||||    
T  48901207 ggcttttgggttgggcctaatgtgcataaattatcgatcgaccccgg-ccaccgcccggagttgccgggcggtggaaccgccc 48901288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 5379 - 5230
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| | ||| ||    
T  5379 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttagattgggt 5280  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgcc 153  Q
    |||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  5279 ctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 17991 - 17822
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||| | ||||||||||  |||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  17991 gtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 17892  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||  |||||  |||||||||||    
T  17891 ctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgcccatg 17822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 53074 - 52941
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||| | |    
T  53074 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttgggttaaat 52975  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacg 137  Q
    ||||||||||||||||||||||||||||||||||    
T  52974 ctaatgtgcaaaaattatcgatcgagcccggacg 52941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 31629 - 31463
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||| | |||||||||||   ||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||| ||    
T  31629 gtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggt 31530  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    ||| ||||||||||||||||||||||||||| |||||| | ||| ||||||| || |||||||||||    
T  31529 ctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgccc 31463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 671 - 502
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| ||||||||    
T  671 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagt 572  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||   |||||| |||||||||||    
T  571 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgcccatg 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 480475 - 480644
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| ||||||||    
T  480475 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagt 480574  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgcccatg 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||   |||||| |||||||||||    
T  480575 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 480644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 1307 - 1260
Alignment:
Q  123 gatcgagcccggacgaccgcccgggatcgccggacggtgaaaccgccc 170  Q
    |||||||||||| |||||||||||| ||||||| |||| |||||||||    
T  1307 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University