View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_3 (Length: 477)
Name: NF10559_low_3
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 407
Target Start/End: Complemental strand, 25273539 - 25273138
Alignment:
| Q |
3 |
tggctccgctactaccgctgtacgatgacgacggaggtgcttgcggtggctggcgtatcaaaggtggtgggatggtggaagtgtttgtcagcggttagtt |
102 |
Q |
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| T |
25273539 |
tggctccgctactaccgctgtacgatgacg---gaggtgcttgtggtggctggcgtatcaaaggtgatgggatggtggaagtgtttgtcagcggtaagtt |
25273443 |
T |
|
| Q |
103 |
taaagttaaaacgacgacggtgtggagagcgaggtcgccagagtggatagcaagagagaatgatttgctaatggtggaagttgcgatgttggatcagtgt |
202 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25273442 |
taaagttaaaacgacgatggcgtggagagcgaggtcgccagagtggatagcaagagagaatgatttgctaatggtggaagttgcgatgttggatcagtgt |
25273343 |
T |
|
| Q |
203 |
gtggttgcagtgatgctgtagctagctcctacttcttctcctatcttannnnnnnatgatttcctttctctctcaaacaaatatttcatatggcctttgt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25273342 |
gtggttgcagtgatgctgtagctagctcctacttcttctcctatcttatttttttatgatttcctttctctctcaaacaaatatttcatatggcatttgt |
25273243 |
T |
|
| Q |
303 |
ttttgttttgatgatgatgatggattgaatgctgagtgtggtggttggagagggtggcgagagagattaagagaaacttgttcttttctatgattttggc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25273242 |
ttttgttttgatgatgatgatggattgaatgctgagtgtggtggttggagagggtggcgagagagattaagagaaacttgttcttttctattattttggc |
25273143 |
T |
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| Q |
403 |
tcctt |
407 |
Q |
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||||| |
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| T |
25273142 |
tcctt |
25273138 |
T |
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