View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_32 (Length: 310)
Name: NF10559_low_32
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 20361850 - 20361566
Alignment:
| Q |
17 |
acaacatgagtctggaaagttgttagatcaggttttcctttctgtgttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361850 |
acaacatgagtctggaaagttgttagatcaggttttcctttatctgttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcag |
20361751 |
T |
|
| Q |
117 |
gatgggtacacttgacaacattatgaaacacaaaagttggagcctaattaaataagtaaaagaagaattagtttagttaatgaacnnnnnnncaaacata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20361750 |
gatgggtacacttgacaacattatgaaacacaaaagttggagcctaattaaataagtaaaagaagaattagtttagttaatgaacaaaaaaacaaacata |
20361651 |
T |
|
| Q |
217 |
ctacaatacaatattattattaccaacctgcttattcaaagcaacgttgcagagtttttcgagagtagggagcacatcttcatct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361650 |
ctacaatacaatattattattaccaacctgcttattcaaagcaacgttgcagagtttttcgagagtagggagcacatcttcatct |
20361566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 21549606 - 21549459
Alignment:
| Q |
63 |
ttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttggagccta |
162 |
Q |
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|||||| ||||||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||| |
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| T |
21549606 |
ttgctttaaaagtaatgtaatataccctaggagcatataaagaagtagcaccaggatgggtacacttgacaactttatcaaacacaaaagttggacccta |
21549507 |
T |
|
| Q |
163 |
at------taaataagt-aaaaga---agaattagtttagttaatgaa |
200 |
Q |
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| T |
21549506 |
atcaataataaataagtaaaaagaattagaattagtttagttaatgaa |
21549459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 55193938 - 55193886
Alignment:
| Q |
105 |
cagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttgga |
157 |
Q |
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||||| || ||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
55193938 |
cagtaccaccagcatgagtacacttgacaactttatgaaacacaaaagttgga |
55193886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 11031910 - 11031962
Alignment:
| Q |
105 |
cagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttgga |
157 |
Q |
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||||| || ||| ||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
11031910 |
cagtaccaccagcatgagtacacttgacaactttatgaaccacaaaagttgga |
11031962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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