View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10559_low_33 (Length: 308)

Name: NF10559_low_33
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10559_low_33
NF10559_low_33
[»] chr4 (1 HSPs)
chr4 (1-290)||(43183284-43183573)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 43183573 - 43183284
Alignment:
Q  1 ttggtatgctgaagcaaaactacttgtatataaaatacaaccaattttttcgtcatcacctttattattgtcctcatgcactatgggaaactacacaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43183573 ttggtatgctgaagcaaaactacttgtatataaaatacaaccaattttttcgtcatcacctttattattgtcctcatgcactatgggaaactacacaagt 43183474  T
Q  101 tcagttgggatgtagagaacacttttgtccatctttctttgcacatggaactacattacttcattagtcatcatctcgtcagctttggataaatgcagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43183473 tcagttgggatgtagagaacacttttgtccatctttctttgcacatggaactacattacttcattagtcatcatctcgtcagctttggataaatgcagtt 43183374  T
Q  201 aataataattatcataatagttgcagtactccacttccaacattgtcaccgtcttccaagcatgaagtatcaagcttgttaaggtattgg 290  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  43183373 aataataattatcataatagttgcaggactcctcttccaacattatcaccgtcttccaagcatgaagtatcaagctcgttaaggtattgg 43183284  T

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