View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_34 (Length: 307)
Name: NF10559_low_34
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 47456982 - 47456698
Alignment:
| Q |
19 |
ccaaaaagcatggtagaaagcatacccaaatctgtcataccgaattataaattcatggttaccttgagttcctcaatgtcatctaaattatttataggta |
118 |
Q |
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| T |
47456982 |
ccaaaaagcatggtagagagcatacccaaatctgtcataccgaattataaattcatggttaccttgagttcctcaatgtcatctaaattatttataggta |
47456883 |
T |
|
| Q |
119 |
caagcaagcaggtcatcaacatcttagctttgttctgcaccctcatataaacaacatgaactactgcagaatgggagaatcgttgctggaacaagaaaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47456882 |
caagcaagcaggtcatcaacatcttagctttgttctgcaccctcacataaacaacatgaactactgcagaatgggagaatcgttgctggaacaagaaaga |
47456783 |
T |
|
| Q |
219 |
gtctatcattttgt-ttttaagtctttggtccttgttttatcccatataaagctatcttcagcctatacaccatgtctctgcttc |
302 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47456782 |
gtctatcattttgttttttaagtctttggtccttgttttatcccatataaagctatcttcagcctatacaccatgtctttgcttc |
47456698 |
T |
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