View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_35 (Length: 305)
Name: NF10559_low_35
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 50120028 - 50120310
Alignment:
| Q |
9 |
gagaagaaaagaggcctagcaattggagctccactaatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcat |
108 |
Q |
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| T |
50120028 |
gagaagaaaagaggcctagcaattggagctccactaatatgagcctcgtagtttattgtgtaaaaatagggtagaagcttatacctcatccccaaggcat |
50120127 |
T |
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| Q |
109 |
ttctagctgattcagctactgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50120128 |
ttctagctgattcagctactgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttc |
50120227 |
T |
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| Q |
209 |
aatccacctattgcaaagctcttcagtagatatagggtatcttaaagttggatagaaagatggatagaaaccacatatatctg |
291 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50120228 |
aatccacctattacaaagctcttcagtagatatagggtatcttaaagttggatagaaagatggatagaaaccacatatatctg |
50120310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 50110038 - 50110264
Alignment:
| Q |
9 |
gagaagaaaagaggcctagcaattggagctccactaatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcat |
108 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| |||| |
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| T |
50110038 |
gagaagaaaagaggcctagcaattggggctccactaatatgagcctcatagtttagggtgtacagatagggtaggagcttatacctcatccccaatgcat |
50110137 |
T |
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| Q |
109 |
ttctagctgattcagctactgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttc |
208 |
Q |
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| T |
50110138 |
ttctagctgattcggctaccgtctcccactggtaaagttcttgtctaggagagtagtagtttgcatggtcccttgaaaatggatagaaagcaccaacttc |
50110237 |
T |
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| Q |
209 |
aatccacctattgcaaagctcttcagt |
235 |
Q |
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| T |
50110238 |
aatccacctattgcaaagctcttcagt |
50110264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 23934762 - 23934538
Alignment:
| Q |
11 |
gaagaaaagaggcctagcaattggagctccactaatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcattt |
110 |
Q |
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||||||||| || || |||||||| | |||||||| |||||| || ||||||| ||||||| ||| ||||||| ||| ||||| || || || |||||| |
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| T |
23934762 |
gaagaaaagtggtcttgcaattggtgatccactaacatgagcttcatagtttaaggtgtaaagatacggtagaatcttgtaccttatacctaaagcattt |
23934663 |
T |
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| Q |
111 |
ctagctgattcagctactgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaa |
210 |
Q |
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|| ||||||| ||||||||| |||||||||||||| |||||||| ||||| | ||| |||||| || || || || ||||||||||||||||||| |
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| T |
23934662 |
cttgctgattgagctactgaatcccattggtaaagctcttgtctcggggagtagtagtttgcatgatctcttgaaaatgggtagaaagcaccaacttcaa |
23934563 |
T |
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| Q |
211 |
tccacctattgcaaagctcttcagt |
235 |
Q |
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|||| |||||||| || |||||||| |
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| T |
23934562 |
tccatctattgcatagttcttcagt |
23934538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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