View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_36 (Length: 304)
Name: NF10559_low_36
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 41874702 - 41874431
Alignment:
| Q |
18 |
caaataaaataaccggcacttaggaaaacaaagagaaaacccacatacaagaacaaaatttgcattctcaaaactcatttcattgctttcagacataata |
117 |
Q |
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| T |
41874702 |
caaataaaataaccggcacttaggaaaacaaagagaaaactcacatacaagaacaaaatttgcattctcaaaactcatttcattgctttcagacataata |
41874603 |
T |
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| Q |
118 |
aaaattcaaagtataatcacaaataacatagaattaatatcatcatttacacacaatataagaaaccaaaactttcattacacacatcaattcaaatcat |
217 |
Q |
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| T |
41874602 |
aaaattcaaactataatcacaaataacatagaattaatatcatcatttacacacaaaataagaaaccaaaactttcattacacacatcaattcaaatcat |
41874503 |
T |
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| Q |
218 |
gttttcatatataaatataaaaattcaaactttaccacttaaatatatattttaattgtttttcttgttctt |
289 |
Q |
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| T |
41874502 |
gttttcatatataaatataaaaattcaaactttaccacttaaatatatattttagttgtttttcttgttctt |
41874431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 9555080 - 9555130
Alignment:
| Q |
240 |
attcaaactttac-cacttaaatatatattttaattgtttttcttgttctt |
289 |
Q |
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| T |
9555080 |
attcaaactttaatcacttaaatatataatttaattgtttttctttttctt |
9555130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 170
Target Start/End: Complemental strand, 28561747 - 28561611
Alignment:
| Q |
34 |
cacttaggaaaacaaagagaaaacccacatacaagaacaaaatttgcattctcaaaactcatttcattgctttcagacataataaaaattcaaagtataa |
133 |
Q |
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| T |
28561747 |
cacttaggcaaacaaagagtaaatcaatatacaataacagaacttgcattctcaaaacccacatcgttgctttcagacatattaacaattcaaaatttaa |
28561648 |
T |
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| Q |
134 |
tcacaaataacatagaattaatatcatcatttacaca |
170 |
Q |
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| T |
28561647 |
tcagaaataacatagaatttatgtcatcatgtacaca |
28561611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 33008752 - 33008677
Alignment:
| Q |
97 |
tcattgctttcagacataataaaaattcaaagtataatcacaaataacatagaattaatatcatcatttacacaca |
172 |
Q |
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| T |
33008752 |
tcattactttcagacatattaaagattcaaacattaatcacaaataacataaaattcacatcatcatgtacacaca |
33008677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 33008612 - 33008522
Alignment:
| Q |
186 |
aaactttcattacacacatcaattcaaatcatgttttcatatataaa-tataaaaattcaaa-ctttaccacttaaatatatattttaatt |
274 |
Q |
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| T |
33008612 |
aaacattcattatacacatcacttcaaattatgtcctcatatataaactttataaattcaaatctttacaactttaatatatattttaatt |
33008522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 18474065 - 18474099
Alignment:
| Q |
249 |
ttaccacttaaatatatattttaattgtttttctt |
283 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
18474065 |
ttaccacctaaatatatattttaattgtttttctt |
18474099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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