View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_37 (Length: 301)
Name: NF10559_low_37
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 3610323 - 3610592
Alignment:
| Q |
13 |
aaggacaataaagcatttgaaagggcactagctgtttttgataaagacacacctgaccgttggtcaaatgttgctcaagctgttggtagtgggaagactc |
112 |
Q |
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| T |
3610323 |
aaggacaataaagcatttgaaagggcactagctgtttttgataaagacacacctgaccgttggtccaatgttgctcaagctgttggtggtgggaagactc |
3610422 |
T |
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| Q |
113 |
ctgaggatgttaagagacactatgaacatctcctaagggatgttaggcacattgaatcaggtcaagttgcattcccaaattacaagaacaatattggagg |
212 |
Q |
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| T |
3610423 |
ctgaggatgttaagagacactatgaacacctcctaagggatgttaggcacattgaatcaggtcaagttgcattcccaaattacaagaac---attggagg |
3610519 |
T |
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| Q |
213 |
ctatgatgaagaaaaaaggtattatacattgtttcaattttttcttataaacatatattatgaagcacgaata |
285 |
Q |
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| T |
3610520 |
ctatgatgaggaaaaaaggtattatacattgtttcaattttttcttataaacatatattatgaagcacgaata |
3610592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 34888371 - 34888187
Alignment:
| Q |
13 |
aaggacaataaagcatttgaaagggcactagctgtttttgataaagacacacctgaccgttggtcaaatgttgctcaagctgttggtagtgggaagactc |
112 |
Q |
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||||| |||||||| |||||||| || ||||||||| ||| ||||||||||| || ||||||| ||||| ||||| ||||||| |||| || |||| |
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| T |
34888371 |
aaggagaataaagcctttgaaagagctttagctgtttatgacaaagacacaccagatcgttggtacaatgtagctcatgctgttg---gtggcaaaactc |
34888275 |
T |
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| Q |
113 |
ctgaggatgttaagagacactatgaacatctcctaagggatgttaggcacattgaatcaggtcaagttgcattcccaaattacaagaa |
200 |
Q |
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| T |
34888274 |
ctgaggaagttaagaaacactatgaacttcttgttgaggatattaaacatattgagtcagggaaagttccatttccaaattacaagaa |
34888187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 208953 - 208893
Alignment:
| Q |
16 |
gacaataaagcatttgaaagggcactagctgtttttgataaagacacacctgaccgttggt |
76 |
Q |
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||||||||||| |||||||| || |||| |||| ||| |||||||||||||| ||||||| |
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| T |
208953 |
gacaataaagcttttgaaagagctttagcagtttatgacaaagacacacctgaacgttggt |
208893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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