View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_39 (Length: 296)
Name: NF10559_low_39
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_39 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 94 - 280
Target Start/End: Original strand, 39491082 - 39491268
Alignment:
| Q |
94 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaataaatca |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
39491082 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccactcaaatatcattaaaatgaaaatcaatca |
39491181 |
T |
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| Q |
194 |
gtgcatattcaaaaggtaactttctatcacatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaactta |
280 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
39491182 |
ctgcatattcaaaaggtaaccttctatcacatattcacttttattttgtccctcctgcaacaaccttagttgccaaccccaaactta |
39491268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 94 - 280
Target Start/End: Original strand, 14959177 - 14959363
Alignment:
| Q |
94 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaataaatca |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |
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| T |
14959177 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccactcaaataccattaaaatgaaaatcaatta |
14959276 |
T |
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| Q |
194 |
gtgcatattcaaaaggtaactttctatcacatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaactta |
280 |
Q |
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| T |
14959277 |
ctgcatattcaaaaggtaaccttctatcacatattcatttttattttgtccctcctgcaacaaccttagttgccaaccccaaactta |
14959363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 28987477 - 28987565
Alignment:
| Q |
1 |
tgaattgagctagtttattctgatttggctatgagattattcaattagaagttgggttttgttg-ttttatatcaagtgtttcttaata |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28987477 |
tgaattgagctagtttattctgatttggctatgagattattcaattagaagttgggttttgttgtttttatatcaagtgtttcttaata |
28987565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 92 - 280
Target Start/End: Original strand, 2224044 - 2224232
Alignment:
| Q |
92 |
cattgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaataaat |
191 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
2224044 |
cattgctatataccacgattaaatatttcaagaataaatcacgaatcacatatatttcatagtttttgaccattcaaataccattaaaatgaaaatcaat |
2224143 |
T |
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| Q |
192 |
cagtgcatattcaaaaggtaactttctatcacatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaactta |
280 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |
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| T |
2224144 |
cagtgcatattcaaaaggtaaccttctatcacatattcacttttattttgtccctcgtgcaacaaccttacttgccaactccaaactta |
2224232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 94 - 280
Target Start/End: Complemental strand, 27585595 - 27585409
Alignment:
| Q |
94 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaataaatca |
193 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| | |
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| T |
27585595 |
ttgctatataccacaattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccactcaaatatcattaaaatgaaaatcaatta |
27585496 |
T |
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| Q |
194 |
gtgcatattcaaaaggtaactttctatcacatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaactta |
280 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
27585495 |
ctgcatattcaaaaggtaaccttctatcacatattcacttttattttgtccctcctgcaacaaccttagttgccaaccccaaactta |
27585409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 94 - 280
Target Start/End: Original strand, 18420 - 18606
Alignment:
| Q |
94 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaataaatca |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| | |
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| T |
18420 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatatttcatagtttttaaccactcaaataccattaaaatgaaaatcaatta |
18519 |
T |
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| Q |
194 |
gtgcatattcaaaaggtaactttctatcacatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaactta |
280 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
18520 |
ctgcatattcaaaaggtaaccttccatcacatattcacttttattttgtccctcctgcaacaaccttagttgccaaccccaaactta |
18606 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 89 - 253
Target Start/End: Original strand, 35181759 - 35181922
Alignment:
| Q |
89 |
caacattgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaata |
188 |
Q |
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||||| ||||||||| |||||||||| |||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
35181759 |
caacactgctatatatcacgattaaaaactttaagaataaatcacgaattacatatatctcctagtttttaaccattcaaataccattaaaatgaaaatc |
35181858 |
T |
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| Q |
189 |
aatcagtgcatattcaaaaggtaactttctatcacatattcacttttattttgtccatcctgcaa |
253 |
Q |
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||||| || |||||||| | ||||| |||||||||||||||||||||||||||||| || ||||| |
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| T |
35181859 |
aatcattgtatattcaata-gtaaccttctatcacatattcacttttattttgtccctcatgcaa |
35181922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 1249511 - 1249580
Alignment:
| Q |
95 |
tgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccat |
164 |
Q |
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||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||| |
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| T |
1249511 |
tgctatatatcacgattaaatactttacgaataaatcatgaatcacatatattccatagttgttaaccat |
1249580 |
T |
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