View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_4 (Length: 458)
Name: NF10559_low_4
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 163 - 447
Target Start/End: Complemental strand, 31708570 - 31708275
Alignment:
| Q |
163 |
attttggataacatgtttttgttccataataaaatactactactactttcttggtttaatatggaaaacatagtttgcttttgtttgaacttataaacag |
262 |
Q |
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| T |
31708570 |
attttggataacatgtttttgttccataataaaataccactactactttcttggtttaatatggaaaacatagtttgcttttgtttaaatttataaacag |
31708471 |
T |
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| Q |
263 |
taacactactttggaaaa------------acctttgaaacttcaacaaaatcaaggtggcacattgatttttggcaaatttactgtaattctaaacatg |
350 |
Q |
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| T |
31708470 |
taacactactttggattagaggtttttttaacctttgaaacttcaacaaaatcaaggtggcacattgatttttggcaaatttactgtaattctaaacatg |
31708371 |
T |
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| Q |
351 |
aacttgaatatcataaaaatccatttgaaaaatgatatcaatttaagtagnnnnnnnnncaccaattaccaagaaaccaaacacaaattttgttcat |
447 |
Q |
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| T |
31708370 |
aacttgaatatcataaaaatccatttgaaaaatgatatc-atttaactagtttttttctcaccaatcaccatgaaaccaaacacaaattttgttcat |
31708275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 31708747 - 31708606
Alignment:
| Q |
19 |
tggggcccttagaaacaattgttgcagtcaatagttgtttgtttcttttaagtgcataatactactgactttgttatatatattgcatgcgtatcaagct |
118 |
Q |
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| T |
31708747 |
tggggcccttagaaacaattgttgcagtcaatagttgtttgtttcttttaagtgcataatact---gactttgttatatatattgcatgtgtatcaagct |
31708651 |
T |
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| Q |
119 |
atcattctattctataatcacaaaactaaatccataatgcttaga |
163 |
Q |
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| T |
31708650 |
atcattctattctataatcacaaaactaaatccataatgcttaga |
31708606 |
T |
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