View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_45 (Length: 269)
Name: NF10559_low_45
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 30119740 - 30119989
Alignment:
| Q |
1 |
tacacgaccattttggatctacccgaaaaacagctatgatatgagagattctctagcagctggcctttgtaattaaacttcaccaattcatcatgaccat |
100 |
Q |
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| T |
30119740 |
tacacgaccattttggatctacctgaaaaacagcaatgatatgagagattctctagcagctggcctttgtaattaaacttcaccaattcatcatgaccat |
30119839 |
T |
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| Q |
101 |
ctgttccaactatatcaccacaatttgtaaaatatactagaaagaagtccggatcaggacgtatagaaaaaacaagagtcttaatccaagatgaatacac |
200 |
Q |
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| T |
30119840 |
ctgttccaactatatcaccacaatttgtaaaatatacaaggaagaagtccggatcaggacgtatagaaaaaacaagagtcttaatccaagatgaatgcac |
30119939 |
T |
|
| Q |
201 |
tgcatattcttgcattacccatatctccactacatccatgtccacaatcc |
250 |
Q |
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| T |
30119940 |
tgcatattcttgcattacccatatctccactacatccatgtccacaatcc |
30119989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 30165982 - 30165861
Alignment:
| Q |
105 |
tccaactatatcaccacaatttgtaaaatatactagaaagaagtccggatcaggacgtatagaaaaaacaagagtcttaatccaagatgaatacactgca |
204 |
Q |
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| T |
30165982 |
tccaactatatcaccgcaatttgtaaagcatattggagaaaaatccagaggaggatgaaaagaaaaatcaagagtcgtagtccaagatgaatgcactgcg |
30165883 |
T |
|
| Q |
205 |
tattcttgcattacccatatct |
226 |
Q |
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| T |
30165882 |
tattcttgcatcacccatatct |
30165861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 30124833 - 30124961
Alignment:
| Q |
51 |
ctctagcagctggcctttgtaattaaacttcaccaattcatcatgaccatctgttccaactatatcaccacaatttgtaaaatatactagaaagaagtcc |
150 |
Q |
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| T |
30124833 |
ctctagcagctgtcctttgtcattaaacttcacgaatccacccctacaatcagttccaactatatcaccgaattttgtaaaggatattggggaaaagtgc |
30124932 |
T |
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| Q |
151 |
ggatcaggacgtatagaaaaaacaagagt |
179 |
Q |
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| T |
30124933 |
ggagcaggatgcatagaaaaaacaagagt |
30124961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 30130741 - 30130867
Alignment:
| Q |
8 |
ccattttggatctacccgaaaaacagctatgatatgagagattctctagcagctggcctttgtaattaaacttcaccaattca---tcatgaccatctgt |
104 |
Q |
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| T |
30130741 |
ccatttgggatctttctgaaaaacaaatatgataggagtcatgctctagcaggtgtcctttattattaaacttcttcaatccacgttcatgatcaactat |
30130840 |
T |
|
| Q |
105 |
tccaactatatcaccacaatttgtaaa |
131 |
Q |
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| T |
30130841 |
tccaactatatcaccgcaatttgtaaa |
30130867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 43164671 - 43164732
Alignment:
| Q |
165 |
agaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatatct |
226 |
Q |
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| T |
43164671 |
agaaaaatcaaaagtcttggtccaagatgaatgcacagcgtattcttgcattacccatatct |
43164732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 41310993 - 41311054
Alignment:
| Q |
165 |
agaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatatct |
226 |
Q |
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| T |
41310993 |
agaaaaatcaaaagtcttagtccaagatgaatgtattgcgtattcttgcatcacccatatct |
41311054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 48863692 - 48863631
Alignment:
| Q |
163 |
atagaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatat |
224 |
Q |
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||||||| |||||||| |||||||||||||||| |||| | ||||||| ||| |||||||| |
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| T |
48863692 |
atagaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatat |
48863631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 49040795 - 49040847
Alignment:
| Q |
172 |
acaagagtcttaatccaagatgaatacactgcatattcttgcattacccatat |
224 |
Q |
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|||||| | |||||||||||||||| |||| ||||||||| ||| |||||||| |
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| T |
49040795 |
acaagaattttaatccaagatgaatgcactccatattcttccatcacccatat |
49040847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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