View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_47 (Length: 255)
Name: NF10559_low_47
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1051001 - 1051196
Alignment:
| Q |
1 |
aagaaccaacatcttctgcaaacaagctacttacaccacaaattggaggtgatgctgttgaaatatcacaattcacaattcaaattgatctatacaaatc |
100 |
Q |
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| T |
1051001 |
aagaaccaacatcttctgcaagcaagctacttacaccacaaattggaggtgatgctgttgaaatatcacaattcacaattcaaattgatctatacaaatc |
1051100 |
T |
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| Q |
101 |
tctccataattcaaattgatttaatataagagacaattgagcagtgaacaaaataacgacagaagttagagacgtagaaataaaattgctcattaaattt |
200 |
Q |
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| T |
1051101 |
tctccataattcaaattgatttaatataagagacaattgag-------caaaataacgacagaagttagagacgtagaaataaaattgctcattaaattt |
1051193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 1046233 - 1046305
Alignment:
| Q |
5 |
accaacatcttctgcaaacaagctacttacaccacaaattggaggtgatgctgttgaaatatcacaattcaca |
77 |
Q |
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| T |
1046233 |
accaatatcttctacagacaaactactcacaccacgaattggaggcaatggtattgaaatatcacaattcaca |
1046305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 1052893 - 1052965
Alignment:
| Q |
5 |
accaacatcttctgcaaacaagctacttacaccacaaattggaggtgatgctgttgaaatatcacaattcaca |
77 |
Q |
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||||| |||||| ||||||| ||||| |||||||||||||||||||||| | || |||| ||||||||||| |
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| T |
1052893 |
accaatatcttcaacaaacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcaca |
1052965 |
T |
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