View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10559_low_51 (Length: 251)
Name: NF10559_low_51
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_51 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25255381 - 25255614
Alignment:
| Q |
1 |
aaactaggctgcttattgagaaagaagtgaagaaattgcttgacagagcttacaaaaatgcaaaaactattataaccacccatgaaaaggagcttcatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25255381 |
aaactaggctgcttattgagaaagaagtgaagaaattgcttgacagagcttacaagaatgcaaaaactattataaccacccatgaaaaggagcttcatgc |
25255480 |
T |
|
| Q |
101 |
gcttgcaaatgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaagtcaaatccccgcagcaacagccgcaatcatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25255481 |
gcttgcaaatgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaagtcaaatccccgcagcaacagccgcaatcatgt |
25255580 |
T |
|
| Q |
201 |
gtagtcgaagctcaaggaagttcacagtccaatc |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
25255581 |
gtagtcgaagctcaaggaaattcacagtccaatc |
25255614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 48142809 - 48143042
Alignment:
| Q |
1 |
aaactaggctgcttattgagaaagaagtgaagaaattgcttgacagagcttacaaaaatgcaaaaactattataaccacccatgaaaaggagcttcatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
48142809 |
aaactaggctgcttattgagaaagaagtgaagaaattgtttgatagagcttacaagaatgcaaaaactattctaaccacccatgaaaaggagcttcatgc |
48142908 |
T |
|
| Q |
101 |
gcttgcaaatgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaagtcaaatccccgcagcaacagccgcaatcatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
48142909 |
gcttgcaaatgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaggtcaaatcccagcagcaacagccgcaatcatgt |
48143008 |
T |
|
| Q |
201 |
gtagtcgaagctcaaggaagttcacagtccaatc |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
48143009 |
gtagtcgaagctcaaggaaattcacagtccaatc |
48143042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 48131011 - 48130787
Alignment:
| Q |
1 |
aaactaggctgcttattgagaaagaagtgaagaaattgcttgacagagcttacaaaaatgcaaaaactattataaccacccatgaaaaggagcttcatgc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||| |
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|
| T |
48131011 |
aaactagactgcttattgagaaagaagtgaagaacttgcttgagagagcttacaacaatgcaaaatttattctaaccacccatgacaaggagcttcatgc |
48130912 |
T |
|
| Q |
101 |
gcttgcaaatgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaagtcaaatccccgcagcaacagccgcaatcatgt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
48130911 |
acttgcaaatgctcttctggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaggtcaaatcccagcagcaacagccgcaatcatgt |
48130812 |
T |
|
| Q |
201 |
gtagtcgaagctcaaggaagttcac |
225 |
Q |
| |
|
||||||||| |||| |||||||||| |
|
|
| T |
48130811 |
gtagtcgaaactcagggaagttcac |
48130787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 48122064 - 48121835
Alignment:
| Q |
1 |
aaactaggctgcttattgagaaagaagtgaagaaattgcttgacagagcttacaaaaatgcaaaaactattataaccacccatgaaaaggagcttcatgc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
48122064 |
aaactaggcttcttattgagaaagaagtgaagaacttgcttgacagagcttacaacaatgcaaaagctattctaaccacccatgaaaaggagcttcatgc |
48121965 |
T |
|
| Q |
101 |
gcttgcaaatgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaagtcaaatccccgcagcaacagccgcaatcatgt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| ||||||||||||||| || | |
|
|
| T |
48121964 |
acttgcaaatgctcttctggagcatgagacacttacaggaagtcagataaaggatatacttgcaaaggttaaatcccagcagcaacagccgcagccacat |
48121865 |
T |
|
| Q |
201 |
gtagtcgaagctcaaggaagttcacagtcc |
230 |
Q |
| |
|
|||| ||||| ||| |||||||||| |||| |
|
|
| T |
48121864 |
gtagccgaagttcagggaagttcacggtcc |
48121835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 48112081 - 48111872
Alignment:
| Q |
10 |
tgcttattgagaaagaagtgaagaaattgcttgacagagcttacaaaaatgcaaaaactattataaccacccatgaaaaggagcttcatgcgcttgcaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||| || || || ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48112081 |
tgcttattgagaaagaagtgaagaacttactggagagagcttacaacaatgctaaaactattctaaccacccatgaaaaggagcttcatgcgcttgcaaa |
48111982 |
T |
|
| Q |
110 |
tgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaagtcaaatccccgcagcaacagccgcaatcatgtgtagtcgaa |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||| ||| ||||||| || | ||||| ||||| || |||| ||| ||||||||||| |
|
|
| T |
48111981 |
tgctcttctggagcatgagacacttacaggaagtcaaataaaggatttagttgcaaaggttagatcccagcagccccaagcgcagtcaagtgtagtcgaa |
48111882 |
T |
|
| Q |
210 |
gctcaaggaa |
219 |
Q |
| |
|
|||| |||| |
|
|
| T |
48111881 |
tctcagggaa |
48111872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32014439 - 32014672
Alignment:
| Q |
1 |
aaactaggctgcttattgagaaagaagtgaagaaattgcttgacagagcttacaaaaatgcaaaaactattataaccacccatgaaaaggagcttcatgc |
100 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
32014439 |
aaactaggttgcttattgagaaggaagtgaagaatttgctcgagagagcttacaacaatgcaaaaactattctaaccacccatcaaaaggagcttcatgt |
32014538 |
T |
|
| Q |
101 |
gcttgcaaatgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaagtcaaatccccgcagcaacagccgcaatcatgt |
200 |
Q |
| |
|
|||||||| |||||| || |||||||||||||||||||||||||||| || || ||||||||||| |||||||||| |||| |||| | ||| |||||| |
|
|
| T |
32014539 |
acttgcaaaagctcttttgaagcatgagacacttacaggaagtcagattaaagatttacttgcaaaggtcaaatcccagcagaaacaacagcagtcatgt |
32014638 |
T |
|
| Q |
201 |
gtagtcgaagctcaaggaagttcacagtccaatc |
234 |
Q |
| |
|
|||| ||||||| |||||| || |||||||| |
|
|
| T |
32014639 |
ccagtcaaagctcagggaagtccaaggtccaatc |
32014672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32035684 - 32035914
Alignment:
| Q |
1 |
aaactaggctgcttattgagaaagaagtgaagaaattgcttgacagagcttacaaaaatgcaaaaactattataaccacccatgaaaaggagcttcatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
32035684 |
aaactaggctgcttattgagaaagaagtgaagaatttgcttgagagagcttacaacaatgcataaattattctaaccacccatcaaaaggagcttcatgt |
32035783 |
T |
|
| Q |
101 |
gcttgcaaatgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaaagtcaaatccccgcagcaacagccgcaatcatgt |
200 |
Q |
| |
|
||||||||| |||||| || || || |||||||||||||| ||||||| || | ||||||||||| |||||||||| | || || ||| ||| || |
|
|
| T |
32035784 |
gcttgcaaaggctcttctgaagaatcagacacttacaggacgtcagattaaaaatttacttgcaaatgtcaaatcccggaag---aagtggcagtcacgt |
32035880 |
T |
|
| Q |
201 |
gtagtcgaagctcaaggaagttcacagtccaatc |
234 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |
|
|
| T |
32035881 |
gtagtcaaagctcagggaagttcacagtccaatc |
32035914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 32025683 - 32025848
Alignment:
| Q |
1 |
aaactaggctgcttattgagaaagaagtgaagaaattgcttgacagagcttacaaaaatgcaaaaactattataaccacccatgaaaaggagcttcatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
32025683 |
aaactaggctgcttattgagaaagaagtgaagaatttgcttgagagagcttgcaacaatgcaaaaactattctaaccacccatcaaaaggagcttcatgt |
32025782 |
T |
|
| Q |
101 |
gcttgcaaatgctcttatggagcatgagacacttacaggaagtcagataaaggaattacttgcaaa |
166 |
Q |
| |
|
|||| |||| |||||| || ||||| ||||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
32025783 |
gcttacaaaggctcttctgaagcatcagacacttacaggaaaacagattaaagatttacttgcaaa |
32025848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 31794284 - 31794425
Alignment:
| Q |
1 |
aaactaggctgcttattgagaaagaagtgaagaaattgcttgaca------gagcttacaaaaatgcaaaaactattataaccacccatgaaaaggagct |
94 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||| | |||||||||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
31794284 |
aaactaggctgcttattgagaaagaagggaagaatttgcttgagattgagagagcttacaacaatgcaaaaactattctaaccacccatcaaaaggagct |
31794383 |
T |
|
| Q |
95 |
tcatgcgcttgcaaatgctcttatggagcatgagacacttac |
136 |
Q |
| |
|
||||| | ||||||| |||||| || ||||| |||||||||| |
|
|
| T |
31794384 |
tcatgtgtttgcaaaggctcttctgaagcatcagacacttac |
31794425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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