View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_60 (Length: 243)
Name: NF10559_low_60
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44169608 - 44169384
Alignment:
| Q |
1 |
aattgagaaagatacgtatgccttacttaaacatcaacctactcgagcttttgttgttatatcaaatatgattaaaagtctcacattgaatcgaaattaa |
100 |
Q |
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| T |
44169608 |
aattgagaaagatacgtatgccttacttaaacatcaacctactcgagcttttgttgttatatcaaatatgattaaaagtctcgcattgaatcgaaattaa |
44169509 |
T |
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| Q |
101 |
atattgaatagtatataag-tgatnnnnnnntcccatatttaatacttagagttttagatgaaaatgtaatgttcaattctacttatataattgtttaaa |
199 |
Q |
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|||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
44169508 |
atattgaatagtatatttgataagaagaagatcccatatttaatacttagagttttagatgaaaatgtaatgttcaattttacttgtataattgtttaaa |
44169409 |
T |
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| Q |
200 |
gtttaatacgatgatatatttatgt |
224 |
Q |
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||||||| ||||||||||||||||| |
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| T |
44169408 |
gtttaatgcgatgatatatttatgt |
44169384 |
T |
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