View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_64 (Length: 241)
Name: NF10559_low_64
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 20758195 - 20757982
Alignment:
| Q |
18 |
acaatattgtttcatttgttttgcagctgaaaaattaggccttgccacgtcacctccttacctctccctagtatctaagatcaatttcaacaagaagaat |
117 |
Q |
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| T |
20758195 |
acaatattgtttcatttcttttgcagctgaaaaattaggccttgctacgtcacctccttacctctcactagtatctaagatcaatttcaacaagaagaat |
20758096 |
T |
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| Q |
118 |
gtatcatttttggatggtgttaactttgcatctggaggtgctggaatatttaatggctcagatgaaaattttgtaagtgtagttctaattctttcttttc |
217 |
Q |
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| T |
20758095 |
gtatcattcttggatggtgttaactttgcatctgggggtgctggtatattcaatggcacagatgaaaattttgtaagtgtaattctaattctttcttttc |
20757996 |
T |
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| Q |
218 |
cttcaccatctctg |
231 |
Q |
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||||||||| |||| |
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| T |
20757995 |
cttcaccatttctg |
20757982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 20752936 - 20752759
Alignment:
| Q |
38 |
ttgcagctgaaaaattaggccttgccacgtcacctccttacctctccctagtatctaagatcaatttcaacaagaagaatgtatcatttttggatggtgt |
137 |
Q |
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| T |
20752936 |
ttgcagctgaaaaaataggtcttgccacgtcaccaccttacctctccttagtatctaaaatcaatttcaacaagaagaatgtatcattcttgcatggtgt |
20752837 |
T |
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| Q |
138 |
taactttgcatctggaggtgctggaatatttaatggctcagatgaaaattttgtaagtgtagttctaattctttctttt |
216 |
Q |
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| T |
20752836 |
taactttgcatctggaggtgctggaatatttaatggcacagatccaactattgtaagtgcagttcttatt-tttctttt |
20752759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 20801386 - 20801281
Alignment:
| Q |
112 |
aagaatgtatcatttttggatggtgttaactttgcatctggaggtgctggaatatttaatggctcagatgaaaattttgtaagtgtagttctaattcttt |
211 |
Q |
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||||||||||| || ||| ||||||||||||||| ||||| ||||||||||||||||| ||| |||| ||||| |||||||| |||||||||||||| |
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| T |
20801386 |
aagaatgtatccttcttgagtggtgttaactttgcctctggtggtgctggaatatttaaaggcatagatccaaattatgtaagtgcagttctaattcttt |
20801287 |
T |
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| Q |
212 |
cttttc |
217 |
Q |
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|||||| |
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| T |
20801286 |
cttttc |
20801281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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