View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_68 (Length: 240)
Name: NF10559_low_68
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_68 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 31949224 - 31949458
Alignment:
| Q |
18 |
gagggtttattttactgacggttggacatttttaaagagctttaatgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatcttttt |
117 |
Q |
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| T |
31949224 |
gagggtttattttactgatggttggacatttttaaagagctttaatgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatcttttt |
31949323 |
T |
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| Q |
118 |
ctgatggtggtgagaaatctgcatgttgtttaattggtgtatccttgcttcaatcctccacggagaatgttgtcg------------ttcaatgagtaca |
205 |
Q |
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| T |
31949324 |
ctgatggtggtaagaaatctgcatggagtttaattggtgtatccttgcttcaatcctccacggagaatgttgtcgcagaatcaaggtaccaatgagtaca |
31949423 |
T |
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| Q |
206 |
gaaactcggtagctcaatatggttctaatgccatt |
240 |
Q |
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| T |
31949424 |
gaaactcggtagctcgatatggttctaatgccatt |
31949458 |
T |
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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 27510752 - 27510657
Alignment:
| Q |
25 |
tattttactgacggttggacatttttaaagagctttaatgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatctttttctg |
120 |
Q |
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| T |
27510752 |
tattttactgacggttggacatttttaaagaattttaatgggcttttggctggtacttggatcactgtcatttttgaaaatcgacacctttttctg |
27510657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 39210238 - 39210332
Alignment:
| Q |
25 |
tattttactgacggttggacatttttaaagagctttaatgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatctttttctg |
120 |
Q |
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| T |
39210238 |
tattttactgacggttggacatttttaaaga-attttatgtgcttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctg |
39210332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 7673984 - 7673926
Alignment:
| Q |
62 |
atgggattttgggtggtgcttggatcacaattatttttgcaaatcgacatctttttctg |
120 |
Q |
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| T |
7673984 |
atgggattttggctggtacttgggtcacaattattttttcaaatcgacacatttttctg |
7673926 |
T |
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