View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_69 (Length: 240)
Name: NF10559_low_69
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31169156 - 31168934
Alignment:
| Q |
1 |
tttcgtaagcgtatcttgaaatcattggttgtagcattacaatttacaagcatattctttgacaagtgtcattgcatacgtatgatctttatctaaaata |
100 |
Q |
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| T |
31169156 |
tttcgtaagcgtatcttgaaatcattggttgtagcattacaatctacaagcatattctttgacaagtgtcattgcatacgtatgatctttatctaaaata |
31169057 |
T |
|
| Q |
101 |
atggcaaatgtgttttgatgacaatcattttgttgcatgtgactcaatcttggtataatataactctttctgtctcaatttgatgataaaataaggattc |
200 |
Q |
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| T |
31169056 |
atggcaaatgtgttttgatgacaatcattttgttgcatgtgactcaatcttggtataatataactctttctgtctcaatttgatgataaaataaggattc |
31168957 |
T |
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| Q |
201 |
tttatgccgttaaggtcccagtt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
31168956 |
tttatgccgttaaggtcccagtt |
31168934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 43 - 194
Target Start/End: Original strand, 41643512 - 41643663
Alignment:
| Q |
43 |
tttacaagcatattctttgacaagtgtcattgcatacgtatgatctttatctaaaataatggcaaatgtgttttgatgacaatcattttgttgcatgtga |
142 |
Q |
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| T |
41643512 |
tttactagcatactctttgacaagtgtcattgcatacgtatgatctttatctaaaataatcgcaaatgtgttttgatgacaatctttttattgcacgtga |
41643611 |
T |
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| Q |
143 |
ctcaatcttggtataatataactctttctgtctcaatttgatgataaaataa |
194 |
Q |
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| T |
41643612 |
ctcaatcttggtataatataactctttgtacctcaatttgataataaaataa |
41643663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 19031061 - 19031193
Alignment:
| Q |
57 |
ctttgacaagtgtcattgcatacgtatgatctttatctaaaataatggcaaatgtgttttgatgacaatcatttt-gttgcatgtgactcaatcttggta |
155 |
Q |
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|||| |||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||| || |
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| T |
19031061 |
ctttaacaagtatcattgcatatgcatgatctttatctaaaataatggcaaatatgttttgatgacaatctttttatttgcacgtgactcaatcttgata |
19031160 |
T |
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| Q |
156 |
taatataactctttctgtctcaatttgatgataaaa |
191 |
Q |
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||| |||||||| | ||||||||||| |||||| |
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| T |
19031161 |
taa---aactctttgtacctcaatttgataataaaa |
19031193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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