View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10559_low_7 (Length: 421)
Name: NF10559_low_7
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 406
Target Start/End: Original strand, 17125096 - 17125498
Alignment:
| Q |
5 |
aaggtggtccaattattttgtctcaggtaattaaatnnnnnnntggtatttcaataagttgttatttgtagcannnnnnncaaatgatattattttacca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17125096 |
aaggtggtccaattattttgtctcaggtaattaaataaaaaaatggtatttcaataatttgttatttgtagcatttttttcaaatgatattattttacca |
17125195 |
T |
|
| Q |
105 |
taaaatttatgcagcccattatttgtaataaactgtgatgataaatttactgttgaattaaacatttgtaatccggagtttgactgtgagatagttatag |
204 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17125196 |
taaagtttatgcagcccattatttgtaataaactgtgatgataaatttactgttgaattaaacatttgtaatccggagtttgactgtgagatagttatag |
17125295 |
T |
|
| Q |
205 |
tctggccaa-gattgatccggtcaggatttgaactcggattctcctgaatggatcgtcttgaattgaagtttattaaccactgatttgaattgatacaga |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17125296 |
tctggccaaagattgatccggtcaggatttgaactcggattctcctgaacggatcggcttgaattgaagtttattaaccactgatttgaattgatacaga |
17125395 |
T |
|
| Q |
304 |
ttgagaatgagtatggaccagtggaatgggaaattggtgcacctggaaaatcttacaccaaatggttttctcaaatggctgtaggactaaacactggtgt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17125396 |
ttgagaatgagtatggaccagtggaatgggaaattggtgcacctggaaaatcttacaccaaatggttttctcaaatggctgtaggactaaacactggtgt |
17125495 |
T |
|
| Q |
404 |
tcc |
406 |
Q |
| |
|
||| |
|
|
| T |
17125496 |
tcc |
17125498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 301 - 403
Target Start/End: Original strand, 5230327 - 5230429
Alignment:
| Q |
301 |
agattgagaatgagtatggaccagtggaatgggaaattggtgcacctggaaaatcttacaccaaatggttttctcaaatggctgtaggactaaacactgg |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||| | |||||||||||||||| ||| | ||||| |
|
|
| T |
5230327 |
agattgagaatgagtatggacctgtggaatgggaaattggtgctcctggaaaggcttacacaaaatgggctgctcaaatggctgtaggtctagatactgg |
5230426 |
T |
|
| Q |
401 |
tgt |
403 |
Q |
| |
|
||| |
|
|
| T |
5230427 |
tgt |
5230429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University