View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_72 (Length: 233)
Name: NF10559_low_72
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 37831376 - 37831503
Alignment:
| Q |
91 |
gtaactcatcattttcataaacggtgaactgtacaaatgaatatcaacaaggacatgaaagagagtacggataatttcaataattagattaggtgtacca |
190 |
Q |
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| T |
37831376 |
gtaactcttcattttcataaacggtgtactgtacaaatgaatttcaacaaggacatgaaagagagtatggaaaatttcaataattagattaggtgtacca |
37831475 |
T |
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| Q |
191 |
ttatccgttgcctttgcaccactaatat |
218 |
Q |
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| T |
37831476 |
ttatccgttgcctttgcaccactaatat |
37831503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 37831220 - 37831277
Alignment:
| Q |
12 |
aagcagagacgagcttacgtacagtgaattgtattgtaaagtaactgatgctagcatt |
69 |
Q |
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| T |
37831220 |
aagcaaagacgagcttacgtacagtgaattgtattgtaaagtaactgatgctagcatt |
37831277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 37839428 - 37839486
Alignment:
| Q |
136 |
aacaaggacatgaaagagagtacggataatttcaataattagattaggtgtaccattat |
194 |
Q |
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| T |
37839428 |
aacaaggacaggaaagagagcatggataatttcaataattggattatttgtaccattat |
37839486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 38392067 - 38392009
Alignment:
| Q |
136 |
aacaaggacatgaaagagagtacggataatttcaataattagattaggtgtaccattat |
194 |
Q |
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| T |
38392067 |
aacaaggacaggaaagagagcatggataatttcaataattggattatctgtaccattat |
38392009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 38400652 - 38400598
Alignment:
| Q |
140 |
aggacatgaaagagagtacggataatttcaataattagattaggtgtaccattat |
194 |
Q |
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| T |
38400652 |
aggacaggaaagaaagcatggataatttcaataattggattatgtgtaccattat |
38400598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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