View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_74 (Length: 230)
Name: NF10559_low_74
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 17594489 - 17594287
Alignment:
| Q |
12 |
agagacacaaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaaattgaaatttcatattggcagcaaaattgata |
111 |
Q |
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| T |
17594489 |
agagacacaaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaaattgaaatttcatattggcagcaaaattgata |
17594390 |
T |
|
| Q |
112 |
ttacgtactctatttacaatttaaactatgaaaatataaatcacattcataaccttccacaacttgatggtgtcacttgcaatttatagccatcataaaa |
211 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17594389 |
ttgcgtactctatttacaatttaaactatgaaaatataaatcacattcatagccttccacaacttgatggtgtcacttgcaatttatagccatcataaaa |
17594290 |
T |
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| Q |
212 |
gct |
214 |
Q |
| |
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||| |
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| T |
17594289 |
gct |
17594287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 26906331 - 26906453
Alignment:
| Q |
12 |
agagacacaaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaaattgaaatttcatattggcagcaaaattgata |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26906331 |
agagacacaaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaaattgaaatttcatattggcagcaaaactgata |
26906430 |
T |
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| Q |
112 |
ttacgtactctatttacaattta |
134 |
Q |
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|||||||||||||||| |||||| |
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| T |
26906431 |
ttacgtactctatttataattta |
26906453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 26906629 - 26906716
Alignment:
| Q |
129 |
aatttaaactatgaaaatataaatcacattcataaccttccacaact--tgatggtgtcacttgcaatttatagccatcataaaagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
26906629 |
aatttaaactatgaaaatataaatcacattcatagccttccacaacttatgatggtgtcacttgcaacttatagccatcataaaagct |
26906716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 20195665 - 20195468
Alignment:
| Q |
19 |
caaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaaattgaaatttcatattggcagcaaaattgatattacgta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20195665 |
caaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaaattgaaatttcatattggcataaaaattgatattacgta |
20195566 |
T |
|
| Q |
119 |
ctctatttacaatttaaactatgaaaatataaatcacattcataaccttccacaact--tgatggtgtcacttgcaatttatagccatcataaaagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20195565 |
ctctatttacaatttaaactatgaaaatataaatcacattcatagccttccacaacttatgatggtgtcacttgcaatttatagccatcataaaagct |
20195468 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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