View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_78 (Length: 224)
Name: NF10559_low_78
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 41812297 - 41812499
Alignment:
| Q |
17 |
agaggcaaaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaa |
116 |
Q |
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| T |
41812297 |
agaggcaaaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaa |
41812396 |
T |
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| Q |
117 |
gagaaagaggaaggcatgttggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcgccgcgagtgtgatgtccatc |
216 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |
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| T |
41812397 |
gagaaagaggaaggaatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcaccgcgagtgtaatgtctatc |
41812496 |
T |
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| Q |
217 |
tca |
219 |
Q |
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||| |
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| T |
41812497 |
tca |
41812499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 24 - 195
Target Start/End: Original strand, 41799088 - 41799259
Alignment:
| Q |
24 |
aaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagagaaag |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||| |||||||||| |
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| T |
41799088 |
aaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgttgaacttaagaagacagttggagagctagagaagtcgatgaaagagaaag |
41799187 |
T |
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| Q |
124 |
aggaaggcatgttggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatc |
195 |
Q |
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| T |
41799188 |
aggaaggcatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgtggattgattatc |
41799259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 41805466 - 41805645
Alignment:
| Q |
17 |
agaggcaaaggcaagaaaggaggaa-tcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaa |
115 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||| |||||||||| | |
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| T |
41805466 |
agaggcaaaggcaagaaagggggaaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagagagttgaagagctagagaagttgatgga |
41805565 |
T |
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| Q |
116 |
agagaaagaggaaggcatgttggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatc |
195 |
Q |
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| T |
41805566 |
agagaaagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatc |
41805645 |
T |
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