View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_79 (Length: 222)
Name: NF10559_low_79
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 26722134 - 26721942
Alignment:
| Q |
13 |
gagaagaaaaaattaattggagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaatt |
112 |
Q |
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| T |
26722134 |
gagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaatt |
26722035 |
T |
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| Q |
113 |
acacaacaaatagagtcttgaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgt |
205 |
Q |
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| T |
26722034 |
acacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgt |
26721942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 45116788 - 45116966
Alignment:
| Q |
13 |
gagaagaaaaaattaattggagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaatt |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45116788 |
gagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaatt |
45116887 |
T |
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| Q |
113 |
acacaacaaatagagtcttgaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttg |
204 |
Q |
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| T |
45116888 |
acacaacaaatagagtcttaaaccatttt-------------ctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttg |
45116966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 2987590 - 2987412
Alignment:
| Q |
13 |
gagaagaaaaaattaattggagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaatt |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2987590 |
gagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagaacattgatggaaatt |
2987491 |
T |
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| Q |
113 |
acacaacaaatagagtcttgaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttg |
204 |
Q |
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|||||||||||||||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2987490 |
acacaacaaatagagtattaaaccattttctc-------------aaatcataatccaaggctcatggtttttcttctttgaaccatatttg |
2987412 |
T |
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