View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_8 (Length: 415)
Name: NF10559_low_8
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 27791713 - 27791900
Alignment:
| Q |
17 |
cttttgacatgatcagttggacaagtgcagaatcagcacctgaaatgtggcaactcacctaaaagaaaccaaacttgttttagaaccccacacacattgt |
116 |
Q |
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| T |
27791713 |
cttttgacatgatcagttggacaagtgcagaatcagcacctgaaatgtggcaactcacctaaaagaaaccaaacttgttttagaaccc--cacacattgt |
27791810 |
T |
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| Q |
117 |
taattacacatcagattcgctgcagtcacaaatttgctgcattcatgcattcagcacataagcccgatttagatccaaaaattgaggatg |
206 |
Q |
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| T |
27791811 |
taattacacatcagattcgctgcagtcacaaatttgccacattcatgcattcagcacataagcctgatctagatccaaaaattgaggatg |
27791900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 237 - 409
Target Start/End: Original strand, 27791876 - 27792048
Alignment:
| Q |
237 |
gatctagatccaaaaattgaggatgtgccatatgcatgaatgcggcaaatttgggactgcagggaatcctgggcatgacagtaaagttaagctttacatc |
336 |
Q |
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| T |
27791876 |
gatctagatccaaaaattgaggatgtgccatatgcatgaatacggcaaatttgtgactgcagggaatcctgggcatgacagtaaagttaagctttacatc |
27791975 |
T |
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| Q |
337 |
tgtgacagaagagttccactagatgtgaaagcaaggctaaattagttagtacatccttgtagtttcatctcac |
409 |
Q |
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| T |
27791976 |
tggggcagaagagttccactagatgtgaaagcaaggataaattagttagtacatccttgtagtttcatttcac |
27792048 |
T |
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