View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10559_low_9 (Length: 414)
Name: NF10559_low_9
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 203 - 403
Target Start/End: Complemental strand, 51710175 - 51709972
Alignment:
| Q |
203 |
tagggaaaattttgattcatttgtatgcctgtgttttggtggtaattttctatgcccacatt------tacannnnnnnnnnnngttataatttttcatt |
296 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
51710175 |
tagggacaattttgcttcatttgtatgcctgtgttttggtggtaattttctatgcccacattataatttacattttttttc---gttataatttttcatt |
51710079 |
T |
|
| Q |
297 |
agaaactcaattcttttaagttgtaaaattttcccgatttacactcaaaattttgttgctgccattttatgtttatctttttcctttttgcatgaattgc |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51710078 |
agaaactcaattcttttaagttgtaaaattttcccgatttacagtcaaaattttgttgctgccattttatgtttatctttttcctttttgcatgaattgc |
51709979 |
T |
|
| Q |
397 |
tctctct |
403 |
Q |
| |
|
| ||||| |
|
|
| T |
51709978 |
tttctct |
51709972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 51710339 - 51710239
Alignment:
| Q |
31 |
ctcatttccttattcatatttctccattaaatccataaaccctaccttttatttgtaacctagccccgttttcttcaaatctgaaatttgaacttaataa |
130 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51710339 |
ctcatttccttactcatatttctccattaaatccataaaccctaccttttatttgtaacctagccccgttttcttcaaatctgaaatttgaacttaataa |
51710240 |
T |
|
| Q |
131 |
t |
131 |
Q |
| |
|
| |
|
|
| T |
51710239 |
t |
51710239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 30716626 - 30716526
Alignment:
| Q |
31 |
ctcatttccttattcatatttctccattaaatccataaaccctaccttttatttgtaacctagccccgttttcttcaaatctgaaatttgaacttaataa |
130 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30716626 |
ctcatttccttactcatatttctcaattaaatccataaaccctaccttttatttgtaacctagccccgttttcttcaaatctgaaatttgaacttaataa |
30716527 |
T |
|
| Q |
131 |
t |
131 |
Q |
| |
|
| |
|
|
| T |
30716526 |
t |
30716526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 30716437 - 30716376
Alignment:
| Q |
203 |
tagggaaaattttgattcatttgtatgcctgtgttttggtggtaattttctatgcccacatt |
264 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30716437 |
tagggacaattttgcttcatctgtatgcctgtgttttggtggtaattttctatgcccacatt |
30716376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University