View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10560_high_5 (Length: 290)
Name: NF10560_high_5
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_high_5 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 42394230 - 42394486
Alignment:
| Q |
16 |
atcatattagtaatcacgtttaacaccgtcaaaaacacttgctccccaacactcaccgttgatccggcacagttgtgaatatactctaccattttccgaa |
115 |
Q |
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| T |
42394230 |
atcatattagtaatcacgttcaacaccgtcaaaaacacttgctccccaacactcaccgttgatccggcacagttgtgaatatactctaccattttccgaa |
42394329 |
T |
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| Q |
116 |
cctcaccacggcggagttcatagactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatccgccattgtggtccgtacgg |
215 |
Q |
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| T |
42394330 |
cctcaccacggcggagttcgtagactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatccgccactgtggtccgtacgg |
42394429 |
T |
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| Q |
216 |
gctccatgatatatctgagccaccgtatgtagctgcttttccggcggcagggggatc |
272 |
Q |
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| T |
42394430 |
gctccatgatatatctgagccaccatatgtagctgcttttccggcggcagggggatc |
42394486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 42378315 - 42378566
Alignment:
| Q |
16 |
atcatattagtaatcacgtttaacaccgtcaaaaacacttgctccccaacactcaccgttgatccggcacagttgtgaatatactctaccattttccgaa |
115 |
Q |
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|||||||| |||||||| || |||||||| ||||| || ||||| |||||| |||||||||| || | | | ||||||||| | ||| ||||||||| |
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| T |
42378315 |
atcatattcgtaatcacattcaacaccgttaaaaaaacctgctcaccaacattcaccgttgaccctacccgatcatgaatatacccgaccgttttccgaa |
42378414 |
T |
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| Q |
116 |
cctcaccacggcggagttcatagactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatccgccattgtggtccgtacgg |
215 |
Q |
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| T |
42378415 |
cctcacctcgtcggagctcgtaaacggagtcaagagttgtgttactaagcatcttcacgacacagatttttctcagcatacgccactgtggaccgtaggg |
42378514 |
T |
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| Q |
216 |
gctccatgatatatctgagccaccgtatgtagctgcttttccggcggcaggg |
267 |
Q |
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| T |
42378515 |
ggtccatactatatcgttgccgccgtaagtggcggctctaccggcggcaggg |
42378566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 120 - 272
Target Start/End: Original strand, 224 - 376
Alignment:
| Q |
120 |
accacggcggagttcatagactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatccgccattgtggtccgtacgggctc |
219 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
224 |
accacggcggagttcatacactgaatcaagacttttattgctaagcatcttcaccacacaaactttcctcagcatccaccactgtggtccgtacgggctc |
323 |
T |
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| Q |
220 |
catgatatatctgagccaccgtatgtagctgcttttccggcggcagggggatc |
272 |
Q |
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| T |
324 |
catgatatatctgagccaccgtatgtagctgcttttccggcagcagggggatc |
376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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