View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10560_high_7 (Length: 275)
Name: NF10560_high_7
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 22718204 - 22718471
Alignment:
| Q |
1 |
ggcatcgccacacctaacttcgccggattctcaaaatctggctggtaagtccttccaagaacgccttcaactttcgaagacagatcatagaatttaaact |
100 |
Q |
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| T |
22718204 |
ggcatcgccacacctaacttcgccggattctcaaaatctggctggtaagtccttccaagaacaccttcaactttcgaagacagatcatagaatttaaact |
22718303 |
T |
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| Q |
101 |
gaacctccaaatgagcaaaagagtcactatcaggaatttgatagttgtggattctactatcttccttagtgacaggcacaacattcacatatatctccac |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22718304 |
gaacctccaaatgagcaaaacagtcactatcaggaatttgatagttgtggattctactatcttccttagtgacaggcacaacattcacatatatctccac |
22718403 |
T |
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| Q |
201 |
aactccttgaacattaacaacaacactgttaatgtttgatgttctctctacactaattttcttctctg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
22718404 |
aactccttgaacattaacaacaacactgttaatgtttgatgttctctctacattaattttcttttctg |
22718471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33878621 - 33878814
Alignment:
| Q |
1 |
ggcatcgccacacctaacttcgccggattctcaaaatctggctggtaagtccttccaagaacgccttcaactttcgaagacagatcatagaatttaaact |
100 |
Q |
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||||| ||||| ||| ||| |||||||| | |||||||||||| |||||||| |||||||| ||||||||||| || || | | |||||||||| |||| |
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| T |
33878621 |
ggcattgccacgcctggctttgccggattttgaaaatctggctgataagtcctaccaagaactccttcaactttggacgataaaccatagaatttgaact |
33878720 |
T |
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| Q |
101 |
gaacctccaaatgagcaaaagagtcactatcaggaatttgatagttgtggattctactatcttccttagtgacaggcacaacattcacatatat |
194 |
Q |
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| T |
33878721 |
gcacatccaaatgagcaaaacaatcatcatcaggaatctgataattatggattctactgtcctccttggtgacaggcaccacattgacagatat |
33878814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 33874408 - 33874560
Alignment:
| Q |
33 |
aaaatctggctggtaagtccttccaagaacgccttcaactttcgaagacagatcatagaatttaaactgaacctccaaatgagcaaaagagtcactatca |
132 |
Q |
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|||||||||||| ||||| ||||||||||| ||||||||||| || || | | |||||||||| ||||| ||||||||||||| ||| | ||| ||| |
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| T |
33874408 |
aaaatctggctgataagttcttccaagaactccttcaactttggacgataaaccatagaatttgaactgcacctccaaatgagagaaacaatcatcatcg |
33874507 |
T |
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| Q |
133 |
ggaatttgatagttgtggattctactatcttccttagtgacaggcacaacatt |
185 |
Q |
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||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||| |
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| T |
33874508 |
ggaatctgatagttatggattctactgtcctccttggtgacaggcaccacatt |
33874560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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