View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10560_low_10 (Length: 318)
Name: NF10560_low_10
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 33386107 - 33385806
Alignment:
| Q |
2 |
ttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttcaggtcttgttacactctacagaatccatcc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33386107 |
ttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttcaggtcttgttacactctacagaatccatcc |
33386008 |
T |
|
| Q |
102 |
cattatttatgaactcttgccactaatatgcatcaaaagaagacaaaagttcttggaggtttgctggatcctcctataatgtatagaccatgtaattgga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33386007 |
cattatttatgaactcttgccactaatatgcatcaaaagaagacaaaacttcttggaggtttgctggatcctcctataatgtatagaccatgtaattgga |
33385908 |
T |
|
| Q |
202 |
ctcttgccagcttcatgtttgattacgatcttcttgtacacctttaggcatgtttcttccatcaattattttggtgttttttgaatctctgcttttgatg |
301 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
33385907 |
ctcttgccagcttcatgtttgattatgatcttcttgtacacctttaggcatgtttcttccatcaattattttggtgttttttgaatcattgctttttatg |
33385808 |
T |
|
| Q |
302 |
tc |
303 |
Q |
| |
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|| |
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| T |
33385807 |
tc |
33385806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 33386981 - 33386952
Alignment:
| Q |
1 |
gttttagtttcttttcaaaatttgtttata |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33386981 |
gttttagtttcttttcaaaatttgtttata |
33386952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 25428240 - 25428289
Alignment:
| Q |
246 |
taggcatgtttcttccatcaattattttggtgttttttgaatctctgctt |
295 |
Q |
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|||||||||| || |||||||||||||||||||||| ||||||| ||||| |
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| T |
25428240 |
taggcatgttcctcccatcaattattttggtgttttctgaatctttgctt |
25428289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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