View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10560_low_17 (Length: 268)
Name: NF10560_low_17
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 25862930 - 25862672
Alignment:
| Q |
1 |
cactcttctactgtatttgtggtgttctcaaatagattaggatcctccatgcctagagaattcttccctcttgctaatggccttatgggatcagtgattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25862930 |
cactcttctactgtatttgtggtgttctcaaatagattaggatcctccatgcctagagaattcttccctcttgctaatggccttatgggatcagtgattg |
25862831 |
T |
|
| Q |
101 |
atgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatattgattatatttacaataatcgatcatcggatttgaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25862830 |
atgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatattgattatatttacaataatcgatcatcggatttgaattt |
25862731 |
T |
|
| Q |
201 |
tgttacaacctcaaatggtcctcttatttttgtcggtgagtactcttcaaattgatgat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25862730 |
tgttacaacctcaaatggtcctcttatttttgtcggtgagtactcttcaaattaatgat |
25862672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 25813385 - 25813210
Alignment:
| Q |
62 |
tcttccctcttgctaatggccttatgggatcagtgattgatgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatat |
161 |
Q |
| |
|
|||| |||||||| ||||| |||||| | || || |||||||| |||||||||| |||||||| ||| |||| ||||||| || |||||| || || |
|
|
| T |
25813385 |
tctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatctttgatgattcgtttgaaaacatgtctgctcaacagaacat |
25813286 |
T |
|
| Q |
162 |
tgattatatttacaataatcgatcatcggatttgaattttgttacaacctcaaatggtcctcttatttttgtcggt |
237 |
Q |
| |
|
||||| ||||||||| ||||| |||||||| ||||||||| ||||||| || ||||||||||||| ||| |||||| |
|
|
| T |
25813285 |
tgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggt |
25813210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 25759294 - 25759469
Alignment:
| Q |
62 |
tcttccctcttgctaatggccttatgggatcagtgattgatgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatat |
161 |
Q |
| |
|
|||| |||||||| ||||| |||||| | || || |||||||| |||||||||| |||||| ||| |||| |||||||| || ||||||||| || |
|
|
| T |
25759294 |
tctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcaatgatttgtttgaaaacatgattgctcaacaaaacat |
25759393 |
T |
|
| Q |
162 |
tgattatatttacaataatcgatcatcggatttgaattttgttacaacctcaaatggtcctcttatttttgtcggt |
237 |
Q |
| |
|
|| || ||||||||| ||||| |||||||| ||||||||| ||||||| || ||||||||||||| ||| |||||| |
|
|
| T |
25759394 |
tgtttttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggt |
25759469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 25788466 - 25788302
Alignment:
| Q |
62 |
tcttccctcttgctaatggccttatgggatcagtgattgatgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatat |
161 |
Q |
| |
|
|||| |||||||| ||||| |||||| | || || |||||||| |||||||||| ||| || | ||| |||| ||||||| || |||||| || || |
|
|
| T |
25788466 |
tctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacattttcgatgattcgtttgaaaacatgtctgctcaacagaacat |
25788367 |
T |
|
| Q |
162 |
tgattatatttacaataatcgatcatcggatttgaattttgttacaacctcaaatggtcctctta |
226 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||||||||| ||||||| || ||||||||||||| |
|
|
| T |
25788366 |
tgattttatttacaataatcgttcatcggagttgaattttattacaacatcgaatggtcctctta |
25788302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 12405448 - 12405273
Alignment:
| Q |
62 |
tcttccctcttgctaatggccttatgggatcagtgattgatgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatat |
161 |
Q |
| |
|
|||| |||||||| ||||| |||||| | || || |||||||| |||||||||| |||||||| ||| |||| ||||||| || |||||| || || |
|
|
| T |
12405448 |
tctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatctttgatgattcgtttgaaaacatgtctgctcaacagaacat |
12405349 |
T |
|
| Q |
162 |
tgattatatttacaataatcgatcatcggatttgaattttgttacaacctcaaatggtcctcttatttttgtcggt |
237 |
Q |
| |
|
||||| ||||||||| ||||| |||||||| ||||||||| ||||||| || ||||||||||||| ||| |||||| |
|
|
| T |
12405348 |
tgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggt |
12405273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University