View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10560_low_2 (Length: 445)

Name: NF10560_low_2
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10560_low_2
NF10560_low_2
[»] chr1 (11 HSPs)
chr1 (18-435)||(29261537-29261954)
chr1 (371-435)||(7966155-7966219)
chr1 (371-435)||(36072535-36072599)
chr1 (371-435)||(1655926-1655990)
chr1 (371-435)||(25039917-25039981)
chr1 (371-435)||(13177972-13178034)
chr1 (371-435)||(46979094-46979158)
chr1 (371-435)||(4518252-4518316)
chr1 (371-435)||(19495212-19495276)
chr1 (371-435)||(8459130-8459194)
chr1 (371-435)||(51666502-51666566)
[»] chr5 (4 HSPs)
chr5 (371-435)||(24053326-24053390)
chr5 (371-435)||(33994985-33995049)
chr5 (371-435)||(24050199-24050263)
chr5 (371-435)||(7796750-7796814)
[»] chr7 (1 HSPs)
chr7 (371-434)||(10705421-10705484)
[»] chr6 (7 HSPs)
chr6 (371-435)||(23959063-23959127)
chr6 (371-435)||(29667669-29667733)
chr6 (371-435)||(2258458-2258522)
chr6 (371-435)||(7537359-7537423)
chr6 (371-435)||(18610069-18610133)
chr6 (371-435)||(26702547-26702611)
chr6 (371-435)||(28362567-28362631)
[»] chr4 (4 HSPs)
chr4 (371-435)||(18578795-18578859)
chr4 (375-435)||(4774454-4774514)
chr4 (371-435)||(38460598-38460662)
chr4 (371-435)||(44050929-44050993)
[»] chr2 (9 HSPs)
chr2 (371-435)||(45479657-45479721)
chr2 (371-435)||(12905692-12905756)
chr2 (371-435)||(9659892-9659956)
chr2 (371-435)||(24601812-24601876)
chr2 (371-435)||(24612238-24612302)
chr2 (371-435)||(25184667-25184731)
chr2 (371-435)||(28342695-28342759)
chr2 (371-435)||(41052794-41052858)
chr2 (371-435)||(41004699-41004763)
[»] chr8 (6 HSPs)
chr8 (372-435)||(4867640-4867703)
chr8 (387-435)||(7172463-7172511)
chr8 (371-435)||(23578607-23578671)
chr8 (371-435)||(43377129-43377193)
chr8 (371-435)||(2124353-2124417)
chr8 (371-435)||(43679569-43679633)
[»] scaffold0219 (1 HSPs)
scaffold0219 (371-435)||(19947-20011)
[»] scaffold0169 (1 HSPs)
scaffold0169 (371-435)||(1520-1584)
[»] chr3 (2 HSPs)
chr3 (371-435)||(67046-67110)
chr3 (371-435)||(6489501-6489565)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 29261954 - 29261537
Alignment:
Q  18 aacaacagccacatacaaaccagattctagttggtaagcttaggacattggttcggtagcagcaaaagaggaataattcctaacttcaataatagtcact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29261954 aacaacagccacatacaaaccagattctagttggtaagcttaggacattggttcggtagcagcaaaagaggaataattcctaacttcaataatagtcact 29261855  T
Q  118 ttcatgtttgttcttgattgcattccaacgcaattgcacaagcaatgccttgagatttagttattcattcatggaaagaaatataaataatgcatactca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29261854 ttcatgtttgttcttgattgcattccaacgcaattgcacaagcaatgccttgagatttagttattcattcatggaaagaaatataaataatgcatactca 29261755  T
Q  218 atctattaaaatggtttcagaggagaagcattacaaaagcaaaagcaaaagcaagggtgtaccaatcgcttctattgtatatcttgtttccaacgaagcc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29261754 atctattaaaatggtttcagaggagaagcattacaaaagcaaaagcaaaagcaagggtgtaccaatcgcttctattgtatatcttgtttccaacgaagcc 29261655  T
Q  318 caaaaatctaatcaacattgtttagatttttgtttaaattcctagaatagagcaaaagatattctattttacttgtttatgactgagtttatatgttcta 417  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||    
T  29261654 caaaaatctaatcaacattgttaagatttttgtttaaattcctagaatagagcaaaagatattgtattttacttgtttatgactgaatttaaatgttgta 29261555  T
Q  418 taagttatattgcctttg 435  Q
    ||||||||||| ||||||    
T  29261554 taagttatattacctttg 29261537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 7966219 - 7966155
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  7966219 aaaagatattgtattttacttgtttatgactgagtttaaatgttgtataagttatattgcctttg 7966155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 36072599 - 36072535
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  36072599 aaaagatattgtattttacttgtttatgactgagtttaactgttgtataagttatattgcctttg 36072535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 1655926 - 1655990
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||||||||||||||||| | |||| ||||| ||||||||||||||||||||    
T  1655926 aaaagatattgtattttacttgtttatgactaaatttaaatgttgtataagttatattgcctttg 1655990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 25039917 - 25039981
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||| |||||    
T  25039917 aaaagatattgtattttacttgtttatgactgagtttaaatgttgtacaagttatattgtctttg 25039981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 13177972 - 13178034
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| ||||||||||||||||||||||||||| |  |  ||||||||||||||||||||    
T  13177972 aaaagatattatattttacttgtttatgactgagtttaaa--taatataagttatattgcctttg 13178034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 46979094 - 46979158
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    ||||||||||||||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  46979094 aaaagatattctatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 46979158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 4518252 - 4518316
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  4518252 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 4518316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 19495276 - 19495212
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| ||| |||||||||||||||| ||||| ||| | ||||||| ||||||    
T  19495276 aaaagatattgtatttttcttatttatgactgagtttaaatgttgtatgaattatattacctttg 19495212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 8459194 - 8459130
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| ||||||||||||  |||||  ||||| ||| | ||||||||||||||    
T  8459194 aaaagatattgtatttttcttgtttatgaccaagtttcaatgttgtatgatttatattgcctttg 8459130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 51666502 - 51666566
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||| ||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  51666502 aaaatatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 51666566  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 24053390 - 24053326
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  24053390 aaaagatattgtattttacttgtttatgactgagtttaaatgttgtataagttatattgcctttg 24053326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 33994985 - 33995049
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  33994985 aaaagatattgtattttacttgtttatgactgagtttaaatgttgtataagttatattgcctttg 33995049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 24050263 - 24050199
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||    
T  24050263 aaaagatattgtattttacttgtttatgactgaatttaaatgttgtataagttatatttcctttg 24050199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 7796814 - 7796750
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| ||||||||| || ||||||  ||||| ||| | ||||||||||||||    
T  7796814 aaaagatattgtatttttcttgtttataaccgagtttcaatgttgtatgatttatattgcctttg 7796750  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 371 - 434
Target Start/End: Complemental strand, 10705484 - 10705421
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgccttt 434  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  10705484 aaaagatattgtattttacttgtttatgactgagtttaaatgttgtataagttatattgccttt 10705421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 23959127 - 23959063
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  23959127 aaaaaatattgtattttacttgtttatgactgagtttaaatgttgtataagttatattgcctttg 23959063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 29667669 - 29667733
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  29667669 aaaagatattgtattttacttgtttatgactgagtttaaaagttgtataagttatattgcctttg 29667733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 2258522 - 2258458
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  2258522 aaaagatattgtatttttcttgtttatgactgagtttaaatgttgtatgagttatattgcctttg 2258458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 7537423 - 7537359
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  7537423 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 7537359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 18610069 - 18610133
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  18610069 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 18610133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 26702547 - 26702611
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| || ||| |||||| ||| | ||||| ||||||||    
T  26702547 aaaagatattgtatttttcttgtttatgaccgaatttctatgttgtatgatttatactgcctttg 26702611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 28362567 - 28362631
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||| ||||||    
T  28362567 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttatatgatttatattacctttg 28362631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 18578859 - 18578795
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  18578859 aaaagatattgtattttacttgtttatgagtgagtttaaatgttgtataagttatattgcctttg 18578795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 4774454 - 4774514
Alignment:
Q  375 gatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||    
T  4774454 gatattgtattttacttgcttatgactgagtttaaatgttgtataagttatattggctttg 4774514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 38460662 - 38460598
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  38460662 aaaagatattatatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 38460598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 44050929 - 44050993
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  44050929 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 44050993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 45479657 - 45479721
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  45479657 aaaagatattgtattttacttgtttatgactgagtttaaatgttgtattagttatattgcctttg 45479721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 12905756 - 12905692
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  12905756 aaaatatattgtattttacttgtttatgactgagtttaaatgttgtatgagttatattgcctttg 12905692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 9659892 - 9659956
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  9659892 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 9659956  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 24601876 - 24601812
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  24601876 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 24601812  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 24612238 - 24612302
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  24612238 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 24612302  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 25184667 - 25184731
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  25184667 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 25184731  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 28342759 - 28342695
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  28342759 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 28342695  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 41052858 - 41052794
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  41052858 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 41052794  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 41004763 - 41004699
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | |||||||| |||||    
T  41004763 aaaagatattatatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgtctttg 41004699  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 435
Target Start/End: Original strand, 4867640 - 4867703
Alignment:
Q  372 aaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    ||||||||| |||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  4867640 aaagatattgtatttttcttgtttatgactgagtttaaatgttgtatgagttatattgcctttg 4867703  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 7172463 - 7172511
Alignment:
Q  387 tacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  7172463 tacttgtttatgactaagtttaaatgttgtataagttatattgcctttg 7172511  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 23578671 - 23578607
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||||| ||||||||||||||    
T  23578671 aaaagatattgtatttttcttgtttatgacagagtttcaatgttgtataatttatattgcctttg 23578607  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 43377129 - 43377193
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  43377129 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 43377193  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 2124417 - 2124353
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||| ||||||| ||||||  ||||| ||| | ||||||||||||||    
T  2124417 aaaagatattatatttttcttggttatgaccgagtttcaatgttgtatgatttatattgcctttg 2124353  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 43679633 - 43679569
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  || || ||| | ||||||||||||||    
T  43679633 aaaagatattgtatttttcttgtttatgaccgagtttcaattttgtatgatttatattgcctttg 43679569  T

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Target: scaffold0219 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 19947 - 20011
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  19947 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 20011  T

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Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 1520 - 1584
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  1520 aaaagatattgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 1584  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 67110 - 67046
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||||| |||||||||||||||| | |||||||| ||||| ||| | ||||||||| ||||    
T  67110 aaaagatattgtattttacttgtttataagtgagtttaaatgttgtatgaattatattgcatttg 67046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 6489565 - 6489501
Alignment:
Q  371 aaaagatattctattttacttgtttatgactgagtttatatgttctataagttatattgcctttg 435  Q
    |||||||| | |||||| |||||||||||| ||||||  ||||| ||| | ||||||||||||||    
T  6489565 aaaagataatgtatttttcttgtttatgaccgagtttcaatgttgtatgatttatattgcctttg 6489501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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