View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10560_low_22 (Length: 240)
Name: NF10560_low_22
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 31691515 - 31691655
Alignment:
| Q |
18 |
atacaaaaacaaacaccattagaatcaattacaaataacgacaatatacatnnnnnnnntcactaaagataaaggtatcctcacatcttcaacatcatac |
117 |
Q |
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| T |
31691515 |
atacaaaaacaaacaccattagaatcaattacaaataacgacaatatacataaaaaaaatcactaaagataaaggtatcctcacatcttcaacatcatac |
31691614 |
T |
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| Q |
118 |
tccactatgtattgatttcgttcaataaaagagtgagtgtt |
158 |
Q |
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| T |
31691615 |
tccactatgtattgatttcgttcaataaaagagtgagtgtt |
31691655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 31691672 - 31691763
Alignment:
| Q |
149 |
agtgagtgttgctagcattcccctaaaactttatcttaagttttgagtgatgtcttatattctcaacatagttttagattgtgctttgtttc |
240 |
Q |
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| T |
31691672 |
agtgagtgttgctagcattcccctaaaattttatcttaagttttgagtgatgtcttatattcccaacatagttttagattgtgttttgtttc |
31691763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 44742322 - 44742293
Alignment:
| Q |
140 |
caataaaagagtgagtgttgctagcattcc |
169 |
Q |
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| T |
44742322 |
caataaaagagtgagtgttgctagcattcc |
44742293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 15660947 - 15660918
Alignment:
| Q |
140 |
caataaaagagtgagtgttgctagcattcc |
169 |
Q |
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| T |
15660947 |
caataaaagagtgagtgttgctagcattcc |
15660918 |
T |
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