View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10560_low_23 (Length: 229)
Name: NF10560_low_23
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33771261 - 33771041
Alignment:
| Q |
1 |
ctgccatgctatcacttttacttatttatggaactgtgtgttgtgtgttcatatcatgtaaagacaattgtggcaaaagagatattattattctatttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33771261 |
ctgccatgctatcacttttacttatttatggaactgtgtgttgtgtgttcatatcatgtaaagacaattgtggcaaaagagatattattattctatttaa |
33771162 |
T |
|
| Q |
101 |
gaattagaacgtggatgattttaaacaaaacaatatttttcataagaacaaactaaaccacctccttgtgtcnnnnnnnnnnctaaaccacctccaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33771161 |
gaattagaacgtggatgattttaaac--aacaatatttttcataagaacaaactaaaccacctccttgtgtc-aaaaaaaaactaaaccacctccaaaat |
33771065 |
T |
|
| Q |
201 |
tttgcactctggtggttcattcat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33771064 |
tttgcactctggtggttcattcat |
33771041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University