View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10560_low_26 (Length: 227)
Name: NF10560_low_26
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_low_26 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 33485463 - 33485638
Alignment:
| Q |
52 |
gctcaaatctgtatccccattagggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
151 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485463 |
gctcaaatctgtatccccacttgggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
33485562 |
T |
|
| Q |
152 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccac |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485563 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccac |
33485638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 33498674 - 33498849
Alignment:
| Q |
52 |
gctcaaatctgtatccccattagggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
151 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33498674 |
gctcaaatctgtatccccacttgggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
33498773 |
T |
|
| Q |
152 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccac |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33498774 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccac |
33498849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University