View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10560_low_27 (Length: 212)

Name: NF10560_low_27

Description: NF10560

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10560_low_27

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 174; E-Value: 8e-94

Query Start/End: Original strand, 39 - 212

Target Start/End: Complemental strand, 32393105 - 32392932

Alignment:

Q	39	ttaaattagttctaactaaccaatgataataagcaagagaattaaacccccaaagttgttgattatgacaataactttagtgattaatcctccaacagat	138	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32393105	ttaaattagttctaactaaccaatgataataagcaagagaattaaacccccaaagttgttgattatgacaataactttagtgattaatcctccaacagat	32393006	T

Q	139	ccaaaagcttccctcatcacactagcatacgttgtctttacacctgcttctgtaaaacgcatgagaaaatccac	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32393005	ccaaaagcttccctcatcacactagcatacgttgtctttacacctgcttctgtaaaacgcatgagaaaatccac	32392932	T

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Target: chr3; HSP #2

Raw Score: 48; E-Value: 1e-18

Query Start/End: Original strand, 54 - 209

Target Start/End: Complemental strand, 32395149 - 32394994

Alignment:

Q	54	ctaaccaatgataataagcaagagaattaaacccccaaagttgttgattatgacaataactttagtgattaatcctccaacagatccaaaagcttccctc	153	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\| \| \|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|
T	32395149	ctaaccaatgataattaggaagagaactaaacccccaaagttagtgattataacacaaacttgagcgcttaaagctccaacggacccaaaagcttccttc	32395050	T

Q	154	atcacactagcatacgttgtctttacacctgcttctgtaaaacgcatgagaaaatc	209	Q
		\|\| \|\|\|\| \|\| \|\| \|\| \|\| \|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32395049	ataacaccagagtatgtcgtggttacaccagcatgtgtaaaacgcatgagaaaatc	32394994	T

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