View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10560_low_3 (Length: 425)
Name: NF10560_low_3
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 29 - 414
Target Start/End: Original strand, 44705886 - 44706271
Alignment:
| Q |
29 |
aagagcaaacaaaattatagtatacatattagcttataagtaataatacatcttcataaatgttcatccatgtttcataactgttagacaacttttacat |
128 |
Q |
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| T |
44705886 |
aagagcaaacaaaattatagtatacatattagcttataagtaataatacatcttcataaatgttcatccatgtttcataactgttagacaacttttacat |
44705985 |
T |
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| Q |
129 |
tacatcactataacaataaacaagaatcgtcctcacacaaaaaattgagatttgaatgaagactgactatattactaagcaaaactaaatcaatgcaact |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44705986 |
tacatcactataacaataaacaagaatcgtcctcacacaaaaaattgagatttgaatgaagactgactatataactaagcaaaactaaatcaatgcaact |
44706085 |
T |
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| Q |
229 |
gtactcataatgttaaggattgagatttgagaatgaactcaagtctcatataatcccaaacctactatcatcacttgatttaacaggctcttttggagaa |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44706086 |
gtactcataatgttaaggattgagatttgagaatgaactcaagtctcatataatcccaaacctactatcatcacttgatttaacaggatcttttggagaa |
44706185 |
T |
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| Q |
329 |
gtacttccaactgaaggtttctcagagtgtatatgtgacaattcatcaactacatctttcctttcactgtaaatgatctctttctt |
414 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44706186 |
gtatttccaactgaaggtttctcagagtgtatatgtgacaattcatcaactacatccttcctttcactgtaaatgatctctttctt |
44706271 |
T |
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