View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10560_low_5 (Length: 390)
Name: NF10560_low_5
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_low_5 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 99 - 390
Target Start/End: Original strand, 31949609 - 31949902
Alignment:
| Q |
99 |
attacaatcagaagctatttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagcggccacctctgtg--caacg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
31949609 |
attacaatcagaagctatttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagtggccacctctgtgtgcaacg |
31949708 |
T |
|
| Q |
197 |
cccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31949709 |
cccgtaagttgatggcaggaataaagatcaaacttggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaa |
31949808 |
T |
|
| Q |
297 |
gacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattagcactgttgattatgt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31949809 |
gacaaaattgcctccatctataggcattggtgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattagcagtgttgattatgt |
31949902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 29707581 - 29707501
Alignment:
| Q |
271 |
tgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgattt |
351 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||| ||||||||||| | ||| ||| | ||||||||| ||||||| |||| |
|
|
| T |
29707581 |
tgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaattt |
29707501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 154 - 375
Target Start/End: Complemental strand, 27510248 - 27510027
Alignment:
| Q |
154 |
ttgtcttgtgtattttctggtgagcggccacctctgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagca |
253 |
Q |
| |
|
||||| ||||| ||||||||||| ||| | | |||||| ||| ||||||||||| | |||| |||||||||| | ||| |||||||||||| || || |
|
|
| T |
27510248 |
ttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagcaaagatcaaattaggtgtcacgggagcagctaaca |
27510149 |
T |
|
| Q |
254 |
ataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttga |
353 |
Q |
| |
|
||| |||||| ||||| ||||| ||||||||||||||| ||| |||||| ||||||||||| | ||||||| ||||||||||| ||||||| |||| | |
|
|
| T |
27510148 |
atagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaa |
27510049 |
T |
|
| Q |
354 |
gcagcttttctgaaagaattag |
375 |
Q |
| |
|
|||| |||||| ||||||||| |
|
|
| T |
27510048 |
gcagtatttctggaagaattag |
27510027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 375
Target Start/End: Original strand, 27271113 - 27271379
Alignment:
| Q |
117 |
ttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagcggccacctctgtgcaacgcccgtaagttgatggcagga |
216 |
Q |
| |
|
|||||| ||| ||||||| ||||||||| || || | |||| |||| ||||||||||| ||| | | |||||||||| ||||||||||| | |||| |
|
|
| T |
27271113 |
ttggaagttgtttatggaattctgtcataatgaacagctgtcatgtgatttttctggtgaatggcaaacattgtgcaacgcgcgtaagttgattgaagga |
27271212 |
T |
|
| Q |
217 |
ataaagatcaaacttggtttcacgggagcagatagcaat--------aaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcc |
308 |
Q |
| |
|
||| |||||| | ||| |||||||||||| || |||| | |||||| |||| ||||| ||||||||||||||||||| |||||| |||| |
|
|
| T |
27271213 |
gcaaatatcaaattaggtgtcacgggagcagctaacaatggggacatagggttgtctatcattgtgcgcctccaatgttggtgttgagaacaaaaatgcc |
27271312 |
T |
|
| Q |
309 |
tccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
375 |
Q |
| |
|
|||||| | ||| ||| | ||||||||| ||||||| |||| |||| |||||| ||||||||| |
|
|
| T |
27271313 |
tccatcagcaagcactggaggaaatggtccatcttatcaatttaagcactatttctggaagaattag |
27271379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 117 - 375
Target Start/End: Original strand, 39210648 - 39210906
Alignment:
| Q |
117 |
ttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagcggccacctctgtgcaacgcccgtaagttgatggcagga |
216 |
Q |
| |
|
|||||| ||| ||| |||||| ||||||||| || ||||| ||||| ||||||||||| ||| | | |||||| ||| | ||||||||| | |||| |
|
|
| T |
39210648 |
ttggaagttgtttacggatttttgtcatgatgaacggttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcataagttgattgaagga |
39210747 |
T |
|
| Q |
217 |
ataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatcta |
316 |
Q |
| |
|
|||||||||| | ||| |||| ||||||| || ||||| |||||| ||||| ||||| ||||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
39210748 |
gcaaagatcaaattaggtgtcacaggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctg |
39210847 |
T |
|
| Q |
317 |
taggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
375 |
Q |
| |
|
| ||||||| ||||||||||| ||||||| |||| ||||| |||||| ||||||||| |
|
|
| T |
39210848 |
caagcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaattag |
39210906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University