View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10560_low_7 (Length: 365)
Name: NF10560_low_7
Description: NF10560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10560_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 3 - 350
Target Start/End: Original strand, 16703446 - 16703797
Alignment:
| Q |
3 |
cataggcattcccaaagtcccccttgaaagtgaggcaatccttcttaaatcatttgactaaacccacaatcttattgaccgacaccactccatccaccaa |
102 |
Q |
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| T |
16703446 |
cataagcattcccaaagtccaccttgaaagtgaggcaatccttcttagatcatatgactaaacccacaatcttattgaccgacaccactccatccaccat |
16703545 |
T |
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| Q |
103 |
ttgtctacctttaaggaaagatgattgattggacgagataattttatccatcgctgaagctaacattgaagccaacactttagcaaccaac----aaagg |
198 |
Q |
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| T |
16703546 |
ttgcctacctttaaggaaagatgatagattgaatgagataattttatccatcgctgaagctaagattgaagccaacactttagcaaccaactgataaagg |
16703645 |
T |
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| Q |
199 |
aacctagaagatagatagaacgaaactccccaagtgactgagggcaacatttagggattaagaccataaataggaggagaaccgttggagaaaagcttca |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16703646 |
aacctagaagatagatagaacgaaactccccaagtgactgagggcaacatttaggaattaagaccataaataggaggagaaccgttggagaaaagcttca |
16703745 |
T |
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| Q |
299 |
gccacacgaagagattctccaaagagaatggcacggcctaagggtagaagat |
350 |
Q |
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| T |
16703746 |
gccacacgaagagattctccaaagagaatggcacggcctaagggtagaagat |
16703797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 5217347 - 5217241
Alignment:
| Q |
15 |
caaagtcccccttgaaagtgaggcaatccttcttaaatcatttgactaaacccacaatcttattgaccgacaccactccatccaccaattgtctaccttt |
114 |
Q |
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| T |
5217347 |
caaagtccactttaaaaatgaggcaatcctgcttaagttttttggctatatccacaacctcattgaccgccaccactccatccaccaattgcccaccttt |
5217248 |
T |
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| Q |
115 |
aaggaaa |
121 |
Q |
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| T |
5217247 |
aaggaaa |
5217241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 2387180 - 2387268
Alignment:
| Q |
66 |
ccacaatcttattgaccgacaccactccatccaccaattgtctacctttaaggaaagatgattgattggacgagataattttatccatc |
154 |
Q |
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| T |
2387180 |
ccacaacctcatttaccgccactactccatccaccaattgcctacctttaaaaaaagttaattgattggacgggatgattttatccatc |
2387268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 30862414 - 30862287
Alignment:
| Q |
66 |
ccacaatcttattgaccgacaccactccatccaccaattgtctacctttaaggaaagatgattgattggacgagataattttatccatcgctgaagctaa |
165 |
Q |
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| T |
30862414 |
ccacaacctcattgaccaccaccactctatccaccaattatctccctttaaggaaagctgactggtttggcgaaatgattttatccatcactgaagtgaa |
30862315 |
T |
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| Q |
166 |
cattgaagccaacactttagcaaccaac |
193 |
Q |
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| T |
30862314 |
ccttgaagctaaaactttaacaatcaac |
30862287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 12077082 - 12077014
Alignment:
| Q |
86 |
accactccatccaccaattgtctacctttaaggaaagatgattgattggacgagataattttatccatc |
154 |
Q |
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| T |
12077082 |
accactccaaccaccaattgcctacctttaagtaaagctgactggttagacgagatggttttatccatc |
12077014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 16573366 - 16573277
Alignment:
| Q |
33 |
tgaggcaatccttcttaaatcatttgactaaacccacaatcttattgaccgacaccactccatccaccaattgtctacctttaaggaaag |
122 |
Q |
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|||||||||||| |||| || |||| ||||| |||||| || |||||||| || |||||| |||||||||| |||||||||||||||| |
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| T |
16573366 |
tgaggcaatcctgcttagattttttggctaaatccacaacctcattgaccgccagcactccgtccaccaattccctacctttaaggaaag |
16573277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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