View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10561_high_1 (Length: 395)
Name: NF10561_high_1
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 30387703 - 30387337
Alignment:
| Q |
19 |
gacccaacattaagcttagctagttttcttctagctaatgaccactaaccatcacnnnnnnnngtggtggatcaaatgagcaataaatatcagtcttaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30387703 |
gacccaacattaagcttagctagttttcttctagctaatgaccactaaccatcacttttttttgtggtggatcaaatgagcaataaatatcagtcttaat |
30387604 |
T |
|
| Q |
119 |
tatata-gtacaacaatttaataaactataagattaannnnnnngtcaataatttcatttttgaattacatactcccaattaataataataatttgggtg |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30387603 |
tatatatgtacaacaatttaataaactataagattaatttttt-gtcaataatttcatttttgaattacatactcccaattaataataataatttgggtg |
30387505 |
T |
|
| Q |
218 |
cctgtctcgtgcatcacgaaacattttttgtcagctgaagagaacattacatttatatatcaatatccattgtgtaacatgacaaacttttctttgataa |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30387504 |
cctgtctcgtgcatcccgaaacattttttgtcagctgaagagaacattacatttatatatcaatatccattgtgtaacatgacaaacttttctttgataa |
30387405 |
T |
|
| Q |
318 |
acaaagtcatatggaaatttaacattgacaatatgagtttttgattcctgttatgttttttctctctg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30387404 |
acaaagtcatatggaaatttaacattgacaatatgagtttttgattcctgttatgttttttctctctg |
30387337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University