View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10561_high_2 (Length: 285)
Name: NF10561_high_2
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 3363290 - 3363553
Alignment:
| Q |
1 |
gcgcacggtctggaacccaaaccgtgcacttttcaccttctgcactcagggaacgcgcagtccccatctaaagcaaagcgccaaaacgcacggtcgtgca |
100 |
Q |
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| T |
3363290 |
gcgcacggtctggaacccagaccgtgcacttttcaccttctgcactcagggaacgcgcagtccccatctaaagcaaa--------acgcacggtcgtgca |
3363381 |
T |
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| Q |
101 |
taaaacgcacggaccgtgcgtaatttcctgccattttgatccttgatgcgcacagttttcttcaacaacacgctaaaacgcacagaccgtgctcttcctc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3363382 |
taaaacgcacagaccgtgcgtaatttcctgccattttgatccttgatgtgcacagttttcttcaacaacacgctaaaacgcacagaccgtgctcttcctc |
3363481 |
T |
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| Q |
201 |
ctgttttgctccttttcttccttcattcctgatcctttcttgctcaaacttgaaccaaaccttcatgcttct |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3363482 |
atgttttgctccttttcttccttcattcctgatcctttcttgctcaaacttgaaccaaaccttcatgcttct |
3363553 |
T |
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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 6530854 - 6530778
Alignment:
| Q |
186 |
accgtgctcttcctcctgttttgctccttttcttccttcattcctgatcctttcttgctcaaacttgaaccaaacct |
262 |
Q |
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|||||||| |||||| |||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||| |
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| T |
6530854 |
accgtgcttttcctcttgttttgctccttttcagccttcattcttgatcctttcttactcaaactcgaaccaaacct |
6530778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 20054752 - 20054653
Alignment:
| Q |
172 |
gctaaaacgcacagaccgtgctcttcctcctgttttgctccttttcttccttcattcctgatcctttcttgctcaaacttgaaccaaaccttcatgcttc |
271 |
Q |
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|||||||||||| |||||||| |||||| |||||||||||||||| |||||||||| ||||| |||||||| |||||| || |||||| || |||||| |
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| T |
20054752 |
gctaaaacgcacgaaccgtgcttttcctcttgttttgctccttttcatccttcattcttgatcttttcttgcctaaacttcaaacaaaccatcttgcttc |
20054653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 17464472 - 17464424
Alignment:
| Q |
195 |
ttcctcctgttttgctccttttcttccttcattcctgatcctttcttgc |
243 |
Q |
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|||||| |||||||||||||||| ||||| |||| ||||| |||||||| |
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| T |
17464472 |
ttcctcttgttttgctccttttcatccttgattcttgatcttttcttgc |
17464424 |
T |
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