View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10561_high_3 (Length: 251)
Name: NF10561_high_3
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 9426081 - 9426255
Alignment:
| Q |
15 |
cacgttattaaaatggaaagtccatagtctttgaaaaactttattttaagccattagaatgtcttcaatacgggaagtccacacagatttattattattt |
114 |
Q |
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| T |
9426081 |
cacgttattaaaatggaaagtccatagtctttgaaaaactttattttaagccattagaatgtcttcaatatgggaagtccacacagatttattattattt |
9426180 |
T |
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| Q |
115 |
tttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctat |
189 |
Q |
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| T |
9426181 |
tttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctat |
9426255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 13598594 - 13598420
Alignment:
| Q |
15 |
cacgttattaaaatggaaagtccatagtctttgaaaaactttattttaagccattagaatgtcttcaatacgggaagtccacacagatttattattattt |
114 |
Q |
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| T |
13598594 |
cacgttattaaaatggaaagtccatagtctttgaaaaactttatttcaagccattagaatgtcttcaatatgggaagtccacacatatttattattattt |
13598495 |
T |
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| Q |
115 |
tttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctat |
189 |
Q |
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| T |
13598494 |
tttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctat |
13598420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 49824710 - 49824631
Alignment:
| Q |
46 |
tgaaaaactttattttaagccattagaatgtcttcaatacgggaagtccacacagatttattattattttttactatcct |
125 |
Q |
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| T |
49824710 |
tgaaatactttattttcagccattagaatgtcttcaacatgtgaagtccagaaggatttattattatatcttgctatcct |
49824631 |
T |
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