View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10561_high_4 (Length: 250)
Name: NF10561_high_4
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39172888 - 39172655
Alignment:
| Q |
1 |
attaattaattgtagaatgagctgagcttcagttgttgttgttttggtataccaagaacagaattaagctattggacaattgcatatttgaaatagtaca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39172888 |
attaattaattgtagaatgagct-----tcagtttttgttgttttggtataccaagaacagaattaagctattggacaactgcatatttgaaatagtaca |
39172794 |
T |
|
| Q |
101 |
ttatcaaatataactctcccacctttaaaagcattaactacaatttacataaacccagctacaaattcaaaaacgaatatggaaatcgatttttccaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39172793 |
ttatcaaatataactctcccacctt-aaaagcattaactacaatttacaaaaacccagctacaaattcaaaaacgaatatggaaatcgatttttccaatt |
39172695 |
T |
|
| Q |
201 |
aaatcgattttaatatggaatcggcccacgactgcctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39172694 |
aaatcgattttaatatggaatcggcccacgactgcctatg |
39172655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 39176762 - 39176548
Alignment:
| Q |
4 |
aattaattgtagaatgagctgagcttcagttgttgttgttttggtataccaagaacagaattaagctatt-ggacaattgcatatttgaaatagtacatt |
102 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
39176762 |
aattaattgtagaataagctg-----cagtttttgttgttatggtataccaagaacagaattatgctatttggacaattccatatttgaaatagtacatt |
39176668 |
T |
|
| Q |
103 |
atcaaatataactctcccacctttaaaagcattaactacaatttacataaacccagctacaaattcaaaaacgaatatggaaatcgatttttccaattaa |
202 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39176667 |
gtcaaatataactctaccacctttaaaagcattaactacaatttacaaaaacccagctacaaattcaaaaacgaatatggaaatcgatttttccaattaa |
39176568 |
T |
|
| Q |
203 |
atcgattttaatatggaatc |
222 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39176567 |
atcgattttaatatggaatc |
39176548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University