View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10561_low_1 (Length: 528)

Name: NF10561_low_1
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10561_low_1
NF10561_low_1
[»] chr3 (15 HSPs)
chr3 (113-409)||(9358748-9359044)
chr3 (122-250)||(47820896-47821026)
chr3 (119-249)||(28934741-28934868)
chr3 (113-249)||(31525363-31525496)
chr3 (120-243)||(28956951-28957074)
chr3 (113-175)||(52076136-52076198)
chr3 (118-173)||(10454357-10454412)
chr3 (119-255)||(20701139-20701275)
chr3 (113-174)||(43073045-43073106)
chr3 (118-175)||(44656229-44656286)
chr3 (126-249)||(53349401-53349523)
chr3 (189-249)||(55166896-55166955)
chr3 (118-174)||(8431422-8431478)
chr3 (189-249)||(8431491-8431549)
chr3 (189-249)||(43073120-43073178)
[»] chr1 (14 HSPs)
chr1 (150-288)||(43268640-43268778)
chr1 (120-409)||(43460533-43460831)
chr1 (113-260)||(19472786-19472933)
chr1 (113-249)||(12172954-12173087)
chr1 (121-258)||(8462976-8463113)
chr1 (113-249)||(26990601-26990734)
chr1 (113-173)||(38548750-38548810)
chr1 (122-249)||(42442015-42442142)
chr1 (113-163)||(28447802-28447852)
chr1 (189-242)||(47028937-47028990)
chr1 (113-172)||(31833965-31834024)
chr1 (127-174)||(46757378-46757425)
chr1 (121-174)||(26385035-26385087)
chr1 (189-250)||(41955963-41956024)
[»] chr8 (13 HSPs)
chr8 (113-297)||(30836127-30836320)
chr8 (27-96)||(31943953-31944022)
chr8 (113-249)||(22839250-22839387)
chr8 (119-243)||(38086419-38086544)
chr8 (118-174)||(40930834-40930890)
chr8 (118-242)||(5200486-5200609)
chr8 (118-249)||(24200626-24200753)
chr8 (122-174)||(25829272-25829324)
chr8 (118-174)||(13959223-13959279)
chr8 (118-166)||(584139-584187)
chr8 (184-249)||(10124859-10124925)
chr8 (118-148)||(7845138-7845168)
chr8 (125-174)||(44362940-44362989)
[»] chr4 (9 HSPs)
chr4 (119-389)||(16662312-16662584)
chr4 (118-243)||(32183282-32183409)
chr4 (118-243)||(16572074-16572198)
chr4 (113-255)||(25641268-25641413)
chr4 (113-174)||(15186980-15187041)
chr4 (113-172)||(47571570-47571629)
chr4 (113-175)||(42390771-42390833)
chr4 (119-153)||(45511407-45511441)
chr4 (196-248)||(42390855-42390906)
[»] chr7 (15 HSPs)
chr7 (118-249)||(30655602-30655734)
chr7 (113-249)||(46691844-46691981)
chr7 (123-260)||(49035862-49036001)
chr7 (118-243)||(31424776-31424902)
chr7 (120-242)||(41702870-41702992)
chr7 (118-174)||(1039067-1039123)
chr7 (122-248)||(33320704-33320825)
chr7 (119-174)||(36615808-36615863)
chr7 (118-175)||(42598057-42598114)
chr7 (122-168)||(32679023-32679069)
chr7 (121-174)||(19471096-19471149)
chr7 (121-174)||(22197744-22197797)
chr7 (121-174)||(22240024-22240077)
chr7 (189-249)||(22197668-22197727)
chr7 (189-249)||(22240094-22240153)
[»] chr5 (11 HSPs)
chr5 (122-260)||(23172981-23173118)
chr5 (121-249)||(10431056-10431185)
chr5 (120-173)||(22887284-22887337)
chr5 (119-249)||(819134-819261)
chr5 (113-164)||(9597753-9597804)
chr5 (122-173)||(9931804-9931855)
chr5 (120-172)||(25539896-25539947)
chr5 (119-174)||(3677795-3677849)
chr5 (188-249)||(2292161-2292223)
chr5 (190-255)||(9931877-9931941)
chr5 (118-169)||(42241593-42241644)
[»] chr2 (5 HSPs)
chr2 (118-250)||(41419616-41419748)
chr2 (117-250)||(14732343-14732474)
chr2 (127-249)||(41378216-41378332)
chr2 (118-243)||(22649069-22649194)
chr2 (118-172)||(38908743-38908797)
[»] chr6 (9 HSPs)
chr6 (113-243)||(15859100-15859234)
chr6 (121-249)||(10246910-10247035)
chr6 (118-249)||(11546765-11546895)
chr6 (122-249)||(34761160-34761287)
chr6 (113-174)||(6575797-6575858)
chr6 (121-175)||(33984833-33984887)
chr6 (113-249)||(33112714-33112851)
chr6 (118-164)||(14459932-14459978)
chr6 (189-255)||(33984747-33984813)
[»] scaffold0209 (1 HSPs)
scaffold0209 (118-166)||(12899-12947)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 113 - 409
Target Start/End: Original strand, 9358748 - 9359044
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 212  Q
    |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||        || ||||||||||||||||||||||||||    
T  9358748 gaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaa-catagaaggggaaatcggttgccgcacaa 9358846  T
Q  213 acaccgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacactgtaaacaccaggaaagcacccaaaacnnnn 312  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||        
T  9358847 acaccggctcgaacaaaaacccctttaaaaaccacccacaaaccaagatgccgcctataaacgtaacaccgtaaacaccaggaaagcacccaaaaccaaa 9358946  T
Q  313 nnnggca-caagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagccaaaaccaataaaacagcaggtccc 409  Q
       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  9358947 aaaggcaccaagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccagccgagccaaaaccactaaaacagcaggtccc 9359044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 47821026 - 47820896
Alignment:
Q  122 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnn--caaagaaggggaaatcggttgccgcacaaacaccga 219  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||     
T  47821026 aaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccgg 47820927  T
Q  220 ctccaacaaaaacccctttaaaaaccaccca 250  Q
    ||| |||||||||||||||||||||||||||    
T  47820926 ctcgaacaaaaacccctttaaaaaccaccca 47820896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 119 - 249
Target Start/End: Original strand, 28934741 - 28934868
Alignment:
Q  119 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccg 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||| |||||||||||||||||  |||||||||||    
T  28934741 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaaca-aaacaaggggaaatcggttgc--cacaaacaccg 28934837  T
Q  219 actccaacaaaaacccctttaaaaaccaccc 249  Q
     ||| |||||||||||||| |||||||||||    
T  28934838 gctcgaacaaaaaccccttaaaaaaccaccc 28934868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 31525496 - 31525363
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 212  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||         |||| |||||||||||||||||| |||||    
T  31525496 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacacaa 31525399  T
Q  213 acaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    ||| || ||| |||||||||||| |||||||||||||    
T  31525398 acaacggctcgaacaaaaacccc-ttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 28957074 - 28956951
Alignment:
Q  120 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccga 219  Q
    |||||||||||||||||||||| |||||| |||| |||| |||||||||||||           ||||||||||||||||||||||| |||||||||||     
T  28957074 caaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaacaccgg 28956975  T
Q  220 ctccaacaaaaacccctttaaaaa 243  Q
    ||| ||||||||||||||||||||    
T  28956974 ctcgaacaaaaacccctttaaaaa 28956951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 52076198 - 52076136
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 175  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52076198 gaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 52076136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 10454412 - 10454357
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 173  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  10454412 ggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgg 10454357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 119 - 255
Target Start/End: Complemental strand, 20701275 - 20701139
Alignment:
Q  119 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag-nnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 217  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||         |||| |||||||||||| ||||| ||| |||  |    
T  20701275 gcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcgattgccacac-aactac 20701177  T
Q  218 gactccaacaaaaacccctttaaaaaccacccacaaac 255  Q
    | ||| |||||||||||||| |||||||||||| ||||    
T  20701176 ggctcgaacaaaaaccccttaaaaaaccacccaaaaac 20701139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 43073045 - 43073106
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  43073045 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 43073106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 44656229 - 44656286
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 175  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggag 44656286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 53349523 - 53349401
Alignment:
Q  126 attattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaa 225  Q
    ||||||||||||||||| | ||| |||||||||||||| || ||||||          || | ||||| |||||||||||||||||||||||| ||| ||    
T  53349523 attattaaccaacaagctcatgcaagaagcactaataaacttgggtgggaaaattaaacatacaagggaaaatcggttgccgcacaaacaccggctcaaa 53349424  T
Q  226 caaaaacccctttaaaaaccaccc 249  Q
    |||||||||| |||||||||||||    
T  53349423 caaaaacccc-ttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 55166896 - 55166955
Alignment:
Q  189 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    ||||||||||||||||||||||||||   | ||| |||||||||||| |||||||||||||    
T  55166896 aaggggaaatcggttgccgcacaaactttggctcgaacaaaaacccc-ttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 8431422 - 8431478
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    |||||||||||||| | ||| |||||||||| ||| ||||||| |||||||| ||||    
T  8431422 ggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatgga 8431478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 8431491 - 8431549
Alignment:
Q  189 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||||||||||||||||  || |||||||| ||| |||||||||||| |||||||||||||    
T  8431491 aaggggaaatcggttgcaaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 8431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 43073120 - 43073178
Alignment:
Q  189 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    ||||||||||||||||||  | |||||||| ||| |||||||||||| |||||||||||||    
T  43073120 aaggggaaatcggttgcctta-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 150 - 288
Target Start/End: Original strand, 43268640 - 43268778
Alignment:
Q  150 agaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  43268640 agaaacactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T
Q  250 acaaaccaaggtgccgcctataaacgtaacactgtaaac 288  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  43268740 acaaacaaaggtgccgtctataaacgtaacactgtaaac 43268778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 120 - 409
Target Start/End: Complemental strand, 43460831 - 43460533
Alignment:
Q  120 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg----gagnnnnnnnncaaagaaggggaaatcggttgccgcacaaa-c 214  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||  ||||    ||         | ||||||||||||||||||||   ||||| |    
T  43460831 caaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtgaaaagaaaaaaaaaactaagaaggggaaatcggttgcgatacaaaac 43460732  T
Q  215 accgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaa-cgtaacactgtaaa--caccaggaaagcacccaaaacnnn 311  Q
    || ||||| |||||||||||||| ||||||||||  ||||| ||||||||||||| ||| ||||||||   |||  |||||||||||||||||||||       
T  43460731 actgactcgaacaaaaaccccttcaaaaaccaccttcaaacaaaggtgccgcctaaaaaacgtaacacacaaaaaacaccaggaaagcacccaaaaccaa 43460632  T
Q  312 nnnnggcac-aagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagccaaaaccaataaaacagcaggtccc 409  Q
        | ||| ||||||||||||||||||||||||||| |||  ||||||||||| ||||||| |||| ||||||||||| |  || |||||||||||||    
T  43460631 acgagacaccaagcaatgaggctgaagtatactatcatgaaagtagcatactcccacctcactaccagccgagccaaaagccctacaacagcaggtccc 43460533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 113 - 260
Target Start/End: Complemental strand, 19472933 - 19472786
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 212  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||        |||||||||||||||| ||||||  ||||    
T  19472933 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccatacaa 19472834  T
Q  213 acaccgactccaacaaaaacccctttaaaaaccacccacaaaccaagg 260  Q
    || ||| ||| |||||||| |||||||||||||||||| |||| ||||    
T  19472833 actccggctcgaacaaaaatccctttaaaaaccacccataaactaagg 19472786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 12173087 - 12172954
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 212  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||         |||| |||||||||||||||||| |||||    
T  12173087 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacacaa 12172990  T
Q  213 acaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    ||| |  ||| |||||||||||| |||||||||||||    
T  12172989 acatcagctcgaacaaaaacccc-ttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 121 - 258
Target Start/End: Original strand, 8462976 - 8463113
Alignment:
Q  121 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 220  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||        || | ||||| |||||||||||| || ||||  || |    
T  8462976 aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcggttgccacaaaaacgtcggc 8463075  T
Q  221 tccaacaaaaacccctttaaaaaccacccacaaaccaa 258  Q
    || |||||||||||||| |||||||||||| |||||||    
T  8463076 tcgaacaaaaaccccttaaaaaaccacccaaaaaccaa 8463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 26990734 - 26990601
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 212  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||         || | ||||| |||||| |||||||||||    
T  26990734 gaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtgga--aaaaaaacatacaagggaaaatcgattgccgcacaa 26990637  T
Q  213 acaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
     ||||| ||| |||||||| ||| |||||||||||||    
T  26990636 gcaccggctcaaacaaaaatccc-ttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 38548810 - 38548750
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 173  Q
    |||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  38548810 gaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgg 38548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 42442015 - 42442142
Alignment:
Q  122 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg-gagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 220  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||  |         |||| || |||||||||||||||    ||||||||||    
T  42442015 aaatattattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgac 42442114  T
Q  221 tccaacaaaaacccctttaaaaaccaccc 249  Q
    || |||||||||||| |||||||||||||    
T  42442115 tcgaacaaaaacccc-ttaaaaaccaccc 42442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 28447852 - 28447802
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataa 163  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  28447852 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 28447802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 47028990 - 47028937
Alignment:
Q  189 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaa 242  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||| ||||    
T  47028990 aaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaaccccttaaaaa 47028937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 31834024 - 31833965
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 172  Q
    |||| |||||||||||||||||||||||  |||||| ||| ||||||| |||||||||||    
T  31834024 gaattggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtg 31833965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 46757425 - 46757378
Alignment:
Q  127 ttattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtgga 46757378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 26385087 - 26385035
Alignment:
Q  121 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    ||||||||||||||| |||||||||| | |||||| |||||||||| |||||||    
T  26385087 aaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtgga 26385035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 41955963 - 41956024
Alignment:
Q  189 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccca 250  Q
    ||||||||||||||||||  |  ||||||| ||| |||||||| ||||| ||||||||||||    
T  41955963 aaggggaaatcggttgccataataacaccggctcgaacaaaaatcccttaaaaaaccaccca 41956024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 30836127 - 30836320
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaat----aagctcgggtggagnnnnnnnncaaa-----gaaggggaaatcggtt 203  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||    |||||||| |||||         |||     ||||||||||||| ||    
T  30836127 gaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaattaataagctcggatggagaaaaaaaaaaaaaaaaagaaggggaaatcgatt 30836226  T
Q  204 gccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacactgtaaacaccaggaaa 297  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  30836227 gccgcacaaataccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgcctataaacgtaacaccgtaaacaccaggaaa 30836320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 31944022 - 31943953
Alignment:
Q  27 actgatagtcatgttgaaacttgtatcattttctaaaagtgaacagtgggagaatcaatgtattgttatt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31944022 actgatagtcatgttgaaacttgtatcattttctaaaagtgaacaatgggagaatcaatgtattgttatt 31943953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 22839387 - 22839250
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgca-ca 211  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||        |||||||| ||||||||||||||  |  |    
T  22839387 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccatataa 22839288  T
Q  212 aacaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||| || ||| |||||||| |||||||||||||||||    
T  22839287 aacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 38086419 - 38086544
Alignment:
Q  119 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag-nnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 217  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||         |||||||||| ||||||||||||  |||||| |     
T  38086419 gcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccatacaaactct 38086518  T
Q  218 gactccaacaaaaacccctttaaaaa 243  Q
    | ||| ||||||||||||||||||||    
T  38086519 ggctcgaacaaaaacccctttaaaaa 38086544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 40930834 - 40930890
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgga 40930890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 5200486 - 5200609
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 217  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||| | ||||||||        || | ||||| |||||||||||||||||||||||    
T  5200486 ggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggag-aaaaaaacatacaagggaaaatcggttgccgcacaaacacc 5200584  T
Q  218 gactccaacaaaaacccctttaaaa 242  Q
    | ||| |||||||||||||| ||||    
T  5200585 ggctcgaacaaaaaccccttaaaaa 5200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 24200626 - 24200753
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 217  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||         || | ||||||||||||||||||||| |||||||    
T  24200626 ggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtgga--aaaaaaacatacaaggggaaatcggttgccgcaaaaacacc 24200723  T
Q  218 gactccaacaaaaacccctttaaaaaccaccc 249  Q
    | ||| ||||||||| |  |||||||||||||    
T  24200724 ggctcgaacaaaaacac--ttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 25829272 - 25829324
Alignment:
Q  122 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25829272 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgga 25829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 13959223 - 13959279
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  13959223 ggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtgga 13959279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 584139 - 584187
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagct 166  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  584139 ggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 10124925 - 10124859
Alignment:
Q  184 caaagaaggggaaatcggttgccgcacaaa-caccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||| ||||||||||||||||||  ||||| ||||| ||| |||||||||||||| |||||||||||    
T  10124925 caaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 10124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 148
Target Start/End: Complemental strand, 7845168 - 7845138
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgc 148  Q
    |||||||||||||||||||||||||||||||    
T  7845168 ggcaaaatattattaaccaacaagcccgtgc 7845138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 44362940 - 44362989
Alignment:
Q  125 tattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    |||||||||||||||| || |||| ||||||||||||||| |||| ||||    
T  44362940 tattattaaccaacaatcctgtgcaagaagcactaataagttcggatgga 44362989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 119 - 389
Target Start/End: Original strand, 16662312 - 16662584
Alignment:
Q  119 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||         | |||||||| ||||| ||||||  || ||||||     
T  16662312 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtgga---aaaaaactaagaagggaaaatctgttgccatacaaaacact 16662408  T
Q  218 gactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctat-aaacgtaa--cactgtaaacaccaggaaagcacccaaaacnnnnnn 314  Q
    | |||  ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||  |||   |||||||| |||| ||||||||||          
T  16662409 ggctcgtacaaaaacccctttaaaaaccaccctcaaacaaaggtgccgcctataaaacgtaaagcacaaaaaacaccatgaaaacacccaaaaccaaacg 16662508  T
Q  315 nggca-caagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagccaaaa 389  Q
     |||| ||||||||||||||||||||||  |||| |||  ||||||||||| ||||||| |||| |||||||||||    
T  16662509 aggcaccaagcaatgaggctgaagtatatcatcatgaaagtagcatactccgacctcactaccagccgagccaaaa 16662584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 32183409 - 32183282
Alignment:
Q  118 ggcaaaatattattaaccaa-caagcccgtgcgagaagcactaataagctcgggtgga-gnnnnnnnncaaagaaggggaaatcggttgccgcacaaaca 215  Q
    |||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||| |        |||||||||||||||||||||||  |||||||    
T  32183409 ggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatcggttgccatacaaaca 32183310  T
Q  216 ccgactccaacaaaaacccctttaaaaa 243  Q
    ||| ||| ||||||||||||||||||||    
T  32183309 ccggctcgaacaaaaacccctttaaaaa 32183282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||          | | ||||||||||||||||||||| |||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  218 gactccaacaaaaacccctttaaaaa 243  Q
    |  || ||| ||||||||||||||||    
T  16572098 ggttcgaac-aaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 25641268 - 25641413
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcac 210  Q
    |||| |||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||          ||||||||||||||| |||||||  ||    
T  25641268 gaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgccatac 25641367  T
Q  211 aaacaccgactccaacaaaaaccccttt-aaaaaccacccacaaac 255  Q
     |||| || ||| ||||||||||| ||| |||||||||||| ||||    
T  25641368 taacatcggctcgaacaaaaacccttttaaaaaaccacccataaac 25641413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 15186980 - 15187041
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  15186980 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 15187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 47571570 - 47571629
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 172  Q
    |||| ||||||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  47571570 gaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtg 47571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 42390771 - 42390833
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 175  Q
    |||| ||| |||| |||||  ||||||||||||||| ||| | ||||||||||||||||||||    
T  42390771 gaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtggag 42390833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 45511407 - 45511441
Alignment:
Q  119 gcaaaatattattaaccaacaagcccgtgcgagaa 153  Q
    |||||||||||||||||||||||||||||| ||||    
T  45511407 gcaaaatattattaaccaacaagcccgtgcaagaa 45511441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 42390855 - 42390906
Alignment:
Q  196 aatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacc 248  Q
    |||||||||||||  |||||||| ||| |||||||||||| ||||||||||||    
T  42390855 aatcggttgccgctaaaacaccggctcaaacaaaaacccc-ttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 30655602 - 30655734
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacac 216  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||         |||| |||||||||||||||||| ||| ||| |     
T  30655602 ggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcggttgccacacaaaatat 30655701  T
Q  217 cgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||||| |||||||||| ||| |||||||||||    
T  30655702 cgactcgaacaaaaacctcttaaaaaaccaccc 30655734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 46691844 - 46691981
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcac 210  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||          || | |||||||||||||||||| ||     
T  46691844 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgccacat 46691943  T
Q  211 aaacaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||||||| ||| |||||||||||| |||||||||||||    
T  46691944 aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 49035862 - 49036001
Alignment:
Q  123 aatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 220  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||||||          |||| |||||||||||||||||| || ||||||||      
T  49035862 aatattattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggt 49035961  T
Q  221 tccaacaaaaacccctttaaaaaccacccacaaaccaagg 260  Q
    || |||||||||||||| |||||||||||| |||| ||||    
T  49035962 tcgaacaaaaaccccttaaaaaaccacccataaacaaagg 49036001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 31424776 - 31424902
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacac 216  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||        |||||||||||||||||||||||   | ||||||    
T  31424776 ggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggttgccattcgaaacac 31424875  T
Q  217 cgactccaacaaaaacccctttaaaaa 243  Q
    || ||| | ||||||||||||||||||    
T  31424876 cggctcgatcaaaaacccctttaaaaa 31424902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 41702992 - 41702870
Alignment:
Q  120 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccga 219  Q
    ||||||||||| ||||||| ||||||||| || |||||||||||| | ||||||||        || | |||||||| |||||||||||||||||||||     
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccgg 41702893  T
Q  220 ctccaacaaaaacccctttaaaa 242  Q
    ||| |||||||||||||| ||||    
T  41702892 ctcgaacaaaaaccccttaaaaa 41702870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 1039067 - 1039123
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1039067 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtgga 1039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 33320825 - 33320704
Alignment:
Q  122 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 221  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||           ||| |||||||||| |||||||  |||||||||| ||    
T  33320825 aaatattgttaaccaacaagcccgtgcaagaagcactaataagctcgggtgg-----gaaaaaaaacaaggggaaattggttgccttacaaacaccggct 33320731  T
Q  222 ccaacaaaaacccctttaaaaaccacc 248  Q
    | ||||||| |||||| ||||||||||    
T  33320730 cgaacaaaacccccttaaaaaaccacc 33320704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 36615808 - 36615863
Alignment:
Q  119 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtgga 36615863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 42598114 - 42598057
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 175  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  42598114 ggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggag 42598057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 32679069 - 32679023
Alignment:
Q  122 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcg 168  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||||    
T  32679069 aaattttattaaccaacaagcccgtgcaagacgcactaataagctcg 32679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 19471096 - 19471149
Alignment:
Q  121 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    ||||||||||||| ||||||||| |||| ||  |||||||||||||||||||||    
T  19471096 aaaatattattaagcaacaagccggtgcaaggtgcactaataagctcgggtgga 19471149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 22197797 - 22197744
Alignment:
Q  121 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    ||||||||||||||||||||| |||||| ||  ||||||| |||||||||||||    
T  22197797 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgga 22197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 22240024 - 22240077
Alignment:
Q  121 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    ||||||||||||||||||||| |||||| ||  ||||||| |||||||||||||    
T  22240024 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgga 22240077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 22197727 - 22197668
Alignment:
Q  189 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||||||||||| || || || |||||||| ||| |||||||||||||| |||||||||||    
T  22197727 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22197668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 22240094 - 22240153
Alignment:
Q  189 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||||||||||| || || || |||||||| ||| |||||||||||||| |||||||||||    
T  22240094 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22240153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 23172981 - 23173118
Alignment:
Q  122 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 221  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||         |||| |||| |||||| ||||||  | |||||||| ||    
T  23172981 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggct 23173080  T
Q  222 ccaacaaaaacccctttaaaaaccacccacaaaccaagg 260  Q
    | ||| |||||||| |||||||||||||| |||| ||||    
T  23173081 cgaac-aaaacccccttaaaaaccacccataaacaaagg 23173118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 249
Target Start/End: Complemental strand, 10431185 - 10431056
Alignment:
Q  121 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnn-caaagaaggggaaatcggttgccgcacaaacaccga 219  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||||||         |||| |||| ||||||||||||| ||||||||||||    
T  10431185 aaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcggttgccacacaaacaccga 10431086  T
Q  220 ctccaacaaaaacccctttaaaaaccaccc 249  Q
    ||| |||||||||| | | |||||||||||    
T  10431085 ctcgaacaaaaacctcataaaaaaccaccc 10431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 22887337 - 22887284
Alignment:
Q  120 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 173  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 22887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 249
Target Start/End: Original strand, 819134 - 819261
Alignment:
Q  119 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccg 218  Q
    |||||||||||||| |||| ||| |||||  ||||||||||||||| |||||||||          ||| || |||||||||||||||  |||||||||     
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaata-aaacaaagggaaatcggttgcc--acaaacacca 819230  T
Q  219 actccaacaaaaacccctttaaaaaccaccc 249  Q
    |||| |||||||||||||| |||||||||||    
T  819231 actcgaacaaaaaccccttaaaaaaccaccc 819261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 9597753 - 9597804
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataag 164  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||||||    
T  9597753 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataag 9597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 9931804 - 9931855
Alignment:
Q  122 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 173  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  9931804 aaatattattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgg 9931855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 25539947 - 25539896
Alignment:
Q  120 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 172  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtg 25539896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 3677795 - 3677849
Alignment:
Q  119 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  3677795 gcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtgga 3677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 2292223 - 2292161
Alignment:
Q  188 gaaggggaaatcggttgccgcacaaa-caccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||||||||||||||||||  ||||| ||||| ||| |||||||||||||| |||||||||||    
T  2292223 gaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 2292161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 9931877 - 9931941
Alignment:
Q  190 aggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaac 255  Q
    ||||||||||||||||||||||||||||  ||| ||||||||| || | |||||||||||| ||||    
T  9931877 aggggaaatcggttgccgcacaaacaccagctcgaacaaaaacacc-tcaaaaaccacccaaaaac 9931941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 42241593 - 42241644
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgg 169  Q
    |||||||||||||||||||| ||| ||| || ||| ||||||||||||||||    
T  42241593 ggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcgg 42241644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 41419748 - 41419616
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaa-agaaggggaaatcggttgccgcacaaacac 216  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||          || | ||||||||||||||||||  |  |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  217 cgactccaacaaaaacccctttaaaaaccaccca 250  Q
    |||||| |||||||||||| ||||||||||||||    
T  41419648 cgactcgaacaaaaacccc-ttaaaaaccaccca 41419616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 14732343 - 14732474
Alignment:
Q  117 aggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacac 216  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |         | | ||||||||||||||| ||||| ||| ||    
T  14732343 aggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgg-gaaaaaaataatacaaggggaaatcggttaccgcaaaaatac 14732441  T
Q  217 cgactccaacaaaaacccctttaaaaaccaccca 250  Q
    |  ||| |||||||||||| ||||||||||||||    
T  14732442 cagctcgaacaaaaacccc-ttaaaaaccaccca 14732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 41378216 - 41378332
Alignment:
Q  127 ttattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaac 226  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||         |||||   ||||||||||||||| ||||||| ||| ||| ||     
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtgga---aaaatacaaag---gggaaatcggttgccacacaaactccggctcgaat 41378309  T
Q  227 aaaaacccctttaaaaaccaccc 249  Q
    |||||||||||||||||||||||    
T  41378310 aaaaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 22649069 - 22649194
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgcc-gcacaaacac 216  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||| |||| |||        |||||||||||||||||||||||    |||||||    
T  22649069 ggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagag-aaaaaaacaaagaaggggaaatcggttgccattccaaacac 22649167  T
Q  217 cgactccaacaaaaacccctttaaaaa 243  Q
    || ||  | ||||||||||||||||||    
T  22649168 cggcttgatcaaaaacccctttaaaaa 22649194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 38908797 - 38908743
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 172  Q
    |||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||    
T  38908797 ggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtg 38908743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 113 - 243
Target Start/End: Complemental strand, 15859234 - 15859100
Alignment:
Q  113 gaataggcaaaatattattaaccaa--caagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnn--caaagaaggggaaatcggttgccgc 208  Q
    |||| |||||||||||||||| |||  ||||||||||| ||  ||||||||||||||||||||||          |||||||||||||||||||||||      
T  15859234 gaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaatcggttgccaa 15859135  T
Q  209 acaaacaccgactccaacaaaaacccctttaaaaa 243  Q
    |||||||||| ||| ||||||||||||||||||||    
T  15859134 acaaacaccggctcgaacaaaaacccctttaaaaa 15859100  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 249
Target Start/End: Complemental strand, 10247035 - 10246910
Alignment:
Q  121 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 220  Q
    |||||||||||||||||||||||||||| ||||||||||| | | || |||||||        |||||||||| |||||||||| | ||||| ||||| |    
T  10247035 aaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaa--caaagaagggaaaatcggttgtcacacaa-caccggc 10246939  T
Q  221 tccaacaaaaacccctttaaaaaccaccc 249  Q
    || ||||||||||||||||||||||||||    
T  10246938 tcgaacaaaaacccctttaaaaaccaccc 10246910  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 249
Target Start/End: Complemental strand, 11546895 - 11546765
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 217  Q
    |||||||||||||||||  |||||||||||| || ||||||||||||||||||| |||        ||||||||| ||||||||||| |  |||||||||    
T  11546895 ggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggt-gagaaaaaaaacaaagaaggagaaatcggttgtcatacaaacacc 11546797  T
Q  218 gactccaacaaaaacccctttaaaaaccaccc 249  Q
    | ||| ||||||||| |||| |||||| ||||    
T  11546796 ggctcgaacaaaaactccttaaaaaactaccc 11546765  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 249
Target Start/End: Complemental strand, 34761287 - 34761160
Alignment:
Q  122 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 221  Q
    |||||||||||| | |||||||||||| || |||||||||||||||||||||          ||||||||  ||||||||||| |  |||||||||||||    
T  34761287 aaatattattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcggttgtcatacaaacaccgact 34761188  T
Q  222 ccaacaaaaacccctttaaaaaccaccc 249  Q
    | ||||||||| |||| |||||||||||    
T  34761187 cgaacaaaaactccttaaaaaaccaccc 34761160  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 6575858 - 6575797
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 174  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  6575858 gaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtgga 6575797  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 33984887 - 33984833
Alignment:
Q  121 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 175  Q
    |||||||||||| |||||||||||||  ||| |||||||||||||||||||||||    
T  33984887 aaaatattattagccaacaagcccgtatgaggagcactaataagctcgggtggag 33984833  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 33112714 - 33112851
Alignment:
Q  113 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg-agnnnnnnnncaaagaaggggaaatcggttgccgcaca 211  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||| || |         |||  ||||||||||||||||||  |||    
T  33112714 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagcttgggggggaaaaaaaaaacaagcaaggggaaatcggttgccataca 33112813  T
Q  212 aacaccgactccaacaaaaacccctttaaaaaccaccc 249  Q
    |||   | ||| |||||||||||||| |||||||||||    
T  33112814 aactttggctcgaacaaaaaccccttaaaaaaccaccc 33112851  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 14459978 - 14459932
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataag 164  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  14459978 ggcaaaatattattagccaacgagcccgtgcgaggagcactaataag 14459932  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 33984813 - 33984747
Alignment:
Q  189 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaac 255  Q
    ||||||||||||||||||  |||||||| |  || |||||||||||||| |||||||||||| ||||    
T  33984813 aaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccacccataaac 33984747  T

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Target: scaffold0209 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 12899 - 12947
Alignment:
Q  118 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagct 166  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  12899 ggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

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