View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10561_low_11 (Length: 277)
Name: NF10561_low_11
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 6466342 - 6466605
Alignment:
| Q |
1 |
agcgacccttattttatattaaaaacatttcataatctttcaatactttttctccaaacctcaaaatatttcagagttatgtttgtaacaattattctta |
100 |
Q |
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| T |
6466342 |
agcgacccttattttatattaaaaacatttcataatctttcaatactttttctccaaacctcaaaatatttcagagttatgtttgtaacaattattctta |
6466441 |
T |
|
| Q |
101 |
ctatttttattttcaggaaacaatgaagatggacgtatgatgttaaatcaaaccttcacgattggtaannnnnnnncaatacaatatagattgttatgaa |
200 |
Q |
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| T |
6466442 |
ctatttttattttcaggaaacaatgaagatggacgtatgatgttaaatcaaaccttcacgattggtaattttttttcaatacaatatagattgttatgaa |
6466541 |
T |
|
| Q |
201 |
ctaatgcttatgattattgtttgcgaagctggaatctttgcatttgttttgctcttgttctctg |
264 |
Q |
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| T |
6466542 |
ctaatgcttatgattattgtttgcgaagctggaatctttgcatttgttttgctcttgttctctg |
6466605 |
T |
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