View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10561_low_13 (Length: 252)
Name: NF10561_low_13
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 10303049 - 10303278
Alignment:
| Q |
15 |
caaaatcctcaaaatcactaagcaaatttctttgaaacattcacaggcaataaggcatgttctagtttatttctattaattaagcaagaatgcatattaa |
114 |
Q |
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| T |
10303049 |
caaaatcctcaaaatcactaagcaaatttctttgaaacattcacaggcaataaggcatgttctagtttatttctattaattaagcaagaatgcatattaa |
10303148 |
T |
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| Q |
115 |
gagtgttgctgaaaattgtatttaggtaaatacgtcccaaggaaatgaacagagaaatgaaaactactagagtaaaacaacttcag--ttttttcctaaa |
212 |
Q |
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| T |
10303149 |
gagtgttgctgaaaattgtatttaggtaaatacgtcccaaggaagtgaacagagaaatgaaaactactagagtaaaacaacttcagttttttttcctaaa |
10303248 |
T |
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| Q |
213 |
ggatgaaaatcttgatattattatcctatg |
242 |
Q |
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| T |
10303249 |
ggatgaaaatcttgatattattatcctatg |
10303278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 10295748 - 10295953
Alignment:
| Q |
32 |
ctaagcaaatttctttgaaacattcacaggcaataaggcatgttctagtttatttctattaattaagcaagaatgcatattaagagtgttgctgaaaatt |
131 |
Q |
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|||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
10295748 |
ctaagcaaatttatgtgaaacattcataggcaataaggcatgttcttgtttatttctattaattaagcaagaatgcatatcaagagtgttacttaaaatt |
10295847 |
T |
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| Q |
132 |
gtatttaggtaaatacgtcccaaggaaatgaacagagaaatgaaaactactagagtaaaacaacttcagttttttcctaaaggatgaaaatcttgatatt |
231 |
Q |
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| T |
10295848 |
gtatttaggt-aatacatcccaaggaaatgaacagagaaatgaaa---actagcgtaaaaaaacttcagttttgtcc-gaaggatgaaaatcttgaaatt |
10295942 |
T |
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| Q |
232 |
attatcctatg |
242 |
Q |
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| T |
10295943 |
attatcctatg |
10295953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 10287448 - 10287542
Alignment:
| Q |
47 |
tgaaacattcacaggcaataaggcatgttctagtttatttctattaattaagcaagaatgcatattaagagtgttgctgaaaattgtatttaggt |
141 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
10287448 |
tgaaacattcacaggcaataaggcaagttctagtttatttctatcaatcaagcaagcatgcatattaagagtgttactgaaaattgtatttaggt |
10287542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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