View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10561_low_16 (Length: 244)
Name: NF10561_low_16
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_16 |
 | |
|
| [»] scaffold0082 (1 HSPs) |
| | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37882243 - 37882469
Alignment:
| Q |
1 |
tgaaatattatatctcttctcttcctccaaaatctcctgccatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccac |
100 |
Q |
| |
|
||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37882243 |
tgaaatactatatctcctctcctcttccaaaatctcctgccatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccac |
37882342 |
T |
|
| Q |
101 |
attgacattggtcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgttttta |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37882343 |
attgacattggtcatggtagagaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgcgtgttttta |
37882442 |
T |
|
| Q |
201 |
agagaacaccgaaaagaccaagtttcc |
227 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
37882443 |
agagaacaccgaaaaaaccaagtttcc |
37882469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 14862 - 14752
Alignment:
| Q |
111 |
gtcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacacc |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14862 |
gtcatggtagagaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacacc |
14763 |
T |
|
| Q |
211 |
gaaaagaccaa |
221 |
Q |
| |
|
||||| ||||| |
|
|
| T |
14762 |
gaaaaaaccaa |
14752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 41903 - 41833
Alignment:
| Q |
41 |
catggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccacattgacattgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41903 |
catggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccacattgatattgg |
41833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 17604618 - 17604524
Alignment:
| Q |
112 |
tcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaa |
206 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||| |||||| ||||| ||||| |||||||||||||| |
|
|
| T |
17604618 |
tcatggtagagaagaaaaacggcacatagaccgtactcgagcttcagatcaatgtccccataagcaaagagtatgcccgattgtttttaagagaa |
17604524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 51195835 - 51195790
Alignment:
| Q |
111 |
gtcatggtcgagaagaaaaacggcgcacggaccgtactcgagcttt |
156 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
51195835 |
gtcatggtagagaagaaaaaccgcgcacggaccgtactccagcttt |
51195790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University