View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10561_low_19 (Length: 227)
Name: NF10561_low_19
Description: NF10561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10561_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 54100967 - 54100784
Alignment:
| Q |
15 |
caaaggggtaggatccaattccaaattcaaaccaaggatatcacgtatgctttctcaacgcaggttcaaccctagtactagaaggttggaagggtgtggg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54100967 |
caaaggggtaggatccaattccaaattcaaaccaaggatatcacgtatgctttctcaacgcatgttcaaccctagtactagaaggttggaagggtgtggg |
54100868 |
T |
|
| Q |
115 |
ttcaaaccaacatgttagacataaatgagggtgaagagaattaagggatggtggccgactattttacaagaattttaaatctca |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54100867 |
ttcaaaccaacatgttagacataaatgagggtgaagagaattaagggatggtggccggctattttacaagaattttaaatctca |
54100784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 54100544 - 54100361
Alignment:
| Q |
15 |
caaaggggtaggatccaattccaaattcaaaccaaggatatcacgtatgctttctcaacgcaggttcaaccctagtactagaaggttggaagggtgtggg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54100544 |
caaaggggtaggatccaattccaaattcaaaccaaggatatcatgtatgctttctcaacgcatgttcaaccatagtactagaaggttggaagggtgtggg |
54100445 |
T |
|
| Q |
115 |
ttcaaaccaacatgttagacataaatgagggtgaagagaattaagggatggtggccgactattttacaagaattttaaatctca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54100444 |
ttcaaaccaacatgttagacataaatgagggtgaagagaactaagggaaggtggccgactattttacaagaattttaaatctca |
54100361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 54100107 - 54099979
Alignment:
| Q |
20 |
gggtaggatccaattccaaattcaaaccaaggatatcacgtatgctttctcaacgcaggttcaaccctagtactagaaggttggaagggtgtgggttcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54100107 |
gggtaggatccaattccaaattcaaatcaaggatatcacgtatgctttctcaacgcaggttcaaccctagtact-gaaggttggaagggtgtgggttcaa |
54100009 |
T |
|
| Q |
120 |
accaacatgttagacataaatgagggtgaa |
149 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
54100008 |
accaacatattagacataaatgagggtgaa |
54099979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 54101257 - 54101209
Alignment:
| Q |
150 |
gagaattaagggatggtggccgactattttacaagaattttaaatctca |
198 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54101257 |
gagaattaagggaaggtggtcgactattttacaagaattttaaatctca |
54101209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University